DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and AT4G14300

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_193166.2 Gene:AT4G14300 / 827071 AraportID:AT4G14300 Length:411 Species:Arabidopsis thaliana


Alignment Length:464 Identity:126/464 - (27%)
Similarity:186/464 - (40%) Gaps:147/464 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
            |...|||||||:||:|..|||:|:|..:|.|:..::|:|.:|.|.|||||:.|.:|..:::||:.
plant     2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

  Fly   264 PIHTLDGKKIDPKHATPK------------NRPRQA-----NKTKKIFVGGVSQDTSAEEVKAYF 311
            . |::|.:::|.|.|..:            |..|.:     ||||||||||:....:.||.:.||
plant    67 K-HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYF 130

  Fly   312 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAA 376
            ..:|||.:..::.||.|.|.||||||:|::||.||.|....||.:..|:||.|:|.||:|     
plant   131 EVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDA----- 190

  Fly   377 QLLQKRIMLGTLGVQLPTAPGQLIGARGAG------------VATMNPLAMLQNPTQLLQSPAAA 429
                           .|...|:.:|..|:|            ...|:....||:.:.....|:..
plant   191 ---------------NPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYG 240

  Fly   430 AAAQQAALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYSIPASAATANAALM 494
            ::..              .|...:.:|.||:|              .|..|:  .||....|...
plant   241 SSGY--------------GAGYGNGSNGAGYG--------------AYGGYT--GSAGGYGAGAT 275

  Fly   495 QAHQAQSVAAAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQAHSAAAAAALA 559
            ..:.|.::..|.                 :.:....|.:      |:...|||..:         
plant   276 AGYGATNIPGAG-----------------YGSSTGVAPR------NSWDTPASSGY--------- 308

  Fly   560 ANAANGAGAAGAHSLAAAAQQAGLMAGNPLNAAAAAAAAAANPAAAYSNYALANVDMSSFQGVDW 624
            .|...|:||  |||                   ......||.|..:.|.|        |.||   
plant   309 GNPGYGSGA--AHS-------------------GYGVPGAAPPTQSPSGY--------SNQG--- 341

  Fly   625 STMYGMGMY 633
               ||.|.|
plant   342 ---YGYGGY 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 33/73 (45%)
RRM2_MSI 292..365 CDD:240769 34/72 (47%)
AT4G14300NP_193166.2 RRM1_hnRNPA_hnRNPD_like 8..78 CDD:409763 31/70 (44%)
RRM2_Hrp1p 111..188 CDD:409767 36/76 (47%)

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