DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and AT3G46020

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_190188.1 Gene:AT3G46020 / 823745 AraportID:AT3G46020 Length:102 Species:Arabidopsis thaliana


Alignment Length:106 Identity:37/106 - (34%)
Similarity:53/106 - (50%) Gaps:22/106 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            :|||..||..|:...|::.|:.||.:.:..:::|..|||.:|||||||.......|.||    :|
plant     8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK----SL 68

  Fly   269 DGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKA 309
            |||.:|               .:.||   |....:||||:|
plant    69 DGKIVD---------------GRLIF---VEVAKNAEEVRA 91

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 29/73 (40%)
RRM2_MSI 292..365 CDD:240769 8/18 (44%)
AT3G46020NP_190188.1 RRM 9..88 CDD:440488 33/100 (33%)

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