Protein Alignment msi and RBP47B

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_188544.1
• Gene: RBP47B / 821447
• AraportID: AT3G19130
• Length: 435
• Species: Arabidopsis thaliana
• Alignment Length: 304
• Identity: 73/304 - (24%)
• Similarity: 130/304 - (42%)
• Gaps: 31/304 - (10%)

  Fly   122 QQSQQAVQQNQNAVVVTPGLEQPKQEPAQQAALALLKENVNASAGA-GQNNGQAAMGGSNKSGSS 185
            ||.||..||...|:...|.......:  ||..|....:.|..:.|. .|::.|....||.:. ..
plant    31 QQQQQQQQQWMAAMQYPPAAAMMMMQ--QQQMLMYPHQYVPYNQGPYQQHHPQLHQYGSYQQ-HQ 92

  Fly   186 GRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFIT 250
            .:...::..|||.|..  .|:||.|........|...|:..|.|:.|.::::.:|.:|.|:||:.
plant    93 HQQHKAIDRGSGDDVK--TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVE 155

  Fly   251 FQEPCTVEKVLKVPIHTLDGKKIDP------KHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKA 309
            |......|:||:....::......|      ..:|.:.|..:......:|||.:|.|.:...:..
plant   156 FLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHE 220

  Fly   310 YFS-QFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDR-VCEIHFHTIKNKKVECKKAQPKEAV 372
            .|| ::..|:...:::|..|.|.:|:|||.|.:|:...| :.|::.....|:::....|.||.|:
plant   221 TFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAI 285

  Fly   373 TPAAQLLQKRIML-------GTLGVQLPTAPGQLIGARGAGVAT 409
            ....|...:.::|       |::|          .|::..|.:|
plant   286 ANQQQHSSQAVILAGGHGSNGSMG----------YGSQSDGEST 319

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	19/79 (24%)
		RRM2_MSI	292..365	CDD:240769	20/74 (27%)
RBP47B	NP_188544.1	RRM1_SECp43_like	109..189	CDD:409780	19/79 (24%)
		RRM2_SECp43_like	201..280	CDD:409781	20/78 (26%)
		RRM_SF	320..391	CDD:473069	73/304 (24%)