DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment msi and AT3G07810

DIOPT Version :9

Sequence 1:	NP_001247303.1	Gene:	msi / 43087	FlyBaseID:	FBgn0011666	Length:	634	Species:	Drosophila melanogaster
Sequence 2:	NP_850539.1	Gene:	AT3G07810 / 819972	AraportID:	AT3G07810	Length:	495	Species:	Arabidopsis thaliana

Alignment Length:	468	Identity:	122/468 - (26%)
Similarity:	188/468 - (40%)	Gaps:	90/468 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly   203 GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHT 267
            ||||:||:||.|:.::|||||:.||.|.:.:|:||..|.|:|||||:.|.:|...|.|: ...|.
plant     6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI-TEKHN 69

  Fly   268 LDGKKIDPKHATPKNRPRQAN---------------KTKKIFVGGVSQDTSAEEVKAYFSQFGPV 317
            :||:.::.|.|.|::.....|               :|:||||||:....:..:.|.||.|||..
plant    70 IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTT 134

  Fly   318 EETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKR 382
            .:.|::.|..|:|.|||||:|:::|:.|::|....||.:..|.||.|:|.|||
plant   135 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKE------------ 187

  Fly   383 IMLGTLGVQLPTAPGQLIGARGAGVA--------TMNPLAMLQNPTQLLQSPAAAAAAQQAALIS 439
                       .:||......|||.:        .:|..|...||          ||.....|..
plant   188 -----------LSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNP----------AAVGGYGLRM 231

  Fly   440 QNPFQVQNAAAAASIANQAGFGKLL-------------TTYPQTALHSVRYAPYSI-------PA 484
            ...|....|..:......:|:|..:             |.|.....:....:||.|       ||
plant   232 DGRFSPVGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPA 296

  Fly   485 SAATANAALMQAHQAQSVAAAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQA 549
            ...........:....||......:.......:::.....|.::..:    .|.:|.:|.|...:
plant   297 VGYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGS----SSGNNTLSGPFGNS 357

  Fly   550 HSAAAAAALAANAAN------GAGAAGAHSLAAAAQQAGLMAGNPLNAAAAAAAAAANPAAAYSN 608
            .....|.....||.:      |.|..|........  .|..|.|| .|..||.:::.:.|:|.:|
plant   358 GVNWGAPGGGNNAVSNENVKFGYGGNGESGFGLGT--GGYAARNP-GANKAAPSSSFSSASATNN 419

  Fly   609 YALANVDMSSFQG 621
            .......::.|.|
plant   420 TGYDTAGLAEFYG 432

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	32/70 (46%)
msi	NP_001247303.1	RRM2_MSI	292..365	CDD:240769	30/72 (42%)
AT3G07810	NP_850539.1	RRM_SF	8..78	CDD:418427	32/70 (46%)
		RRM	<89..286	CDD:223796	56/229 (24%)
		RRM2_Hrp1p	109..186	CDD:409767	32/76 (42%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	82	1.000	Domainoid score	I2908
eggNOG	1	0.900	-	-		E1_KOG4205
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000417
OrthoInspector	1	1.000	-	-		mtm1160
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48032
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X310
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	8	7.870