DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and AT2G22100

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_565526.1 Gene:AT2G22100 / 816745 AraportID:AT2G22100 Length:382 Species:Arabidopsis thaliana


Alignment Length:126 Identity:35/126 - (27%)
Similarity:55/126 - (43%) Gaps:15/126 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
            |.:...:||.||.|.|:.:.||..|.::|.:|:..::.|..|.|::||||:.|:........||.
plant   159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223

  Fly   264 PIHTLDGKKIDPKHATPKN--RPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVM 322
            |...:..:.:....|.|.|  :||:             |....|.||...|..|...|..:
plant   224 PEKRMYNRTVSCLPARPFNSGKPRE-------------QQQPVESVKIDLSHTGNQSEMAL 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 22/73 (30%)
RRM2_MSI 292..365 CDD:240769 7/31 (23%)
AT2G22100NP_565526.1 PABP-1234 <164..>353 CDD:130689 34/121 (28%)
RRM_SF 165..235 CDD:473069 22/69 (32%)

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