DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and UBA1A

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_850021.1 Gene:UBA1A / 816744 AraportID:AT2G22090 Length:347 Species:Arabidopsis thaliana


Alignment Length:426 Identity:91/426 - (21%)
Similarity:134/426 - (31%) Gaps:175/426 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 STPSLSGGSGSDPAPGKLFVGGLSWQTSSD------KLKEYFNMFGTVTDVLIMKDPVTQRSRGF 246
            |||..|..|.||           |..:.||      :|:|....:.  .|.|:  |.|...|| .
plant    37 STPYSSSSSSSD-----------SSDSESDNEFDPEELRELLQPYS--KDQLV--DLVCSASR-I 85

  Fly   247 GFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYF 311
            |          ..:....:...|.   |..|             :||||.|:..:|:.|.:...|
plant    86 G----------SSIYSAVVEAADR---DVTH-------------RKIFVYGLPWETTRETLVGVF 124

  Fly   312 SQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAA 376
            ..:|.:||..:::|:.|.:.:|||||.|:              |.|..|...|  :||       
plant   125 EGYGEIEECTVVIDKATGKAKGFGFVMFK--------------TRKGAKEALK--EPK------- 166

  Fly   377 QLLQKRIMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQN 441
                |||:..|...||               |:|.|                             
plant   167 ----KRILNRTATCQL---------------ASMGP----------------------------- 183

  Fly   442 PFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYSIPASAATANAALMQAHQAQSVAAAA 506
                   ||:....:|.|                   |..|                  |:.:.|
plant   184 -------AASGKGHDQPG-------------------PVKI------------------SMGSMA 204

  Fly   507 HHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAANG------ 565
            :|.|.||||. ..|...:...:||:.....:.::.:.......:.|.||||    ||.|      
plant   205 NHGQPQQQQV-QGQHVFNGGGMAASPFMLGNQYHPLYGAGMLGNPALAAAA----AAGGGYMYPM 264

  Fly   566 -AGAAGAHSLAAAAQQAGLMAGNPLNAAAAAAAAAA 600
             |||.....|.:...|:..|.|..::.:..||..:|
plant   265 LAGALAHGGLGSDMVQSSQMGGIGVDPSVGAAGLSA 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 14/79 (18%)
RRM2_MSI 292..365 CDD:240769 22/72 (31%)
UBA1ANP_850021.1 RRM_SF 104..179 CDD:473069 31/116 (27%)

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