Protein Alignment msi and Hnrnpd

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_077380.2
• Gene: Hnrnpd / 79256
• RGDID: 620365
• Length: 353
• Species: Rattus norvegicus
• Alignment Length: 299
• Identity: 110/299 - (36%)
• Similarity: 146/299 - (48%)
• Gaps: 57/299 - (19%)

  Fly   134 AVVVTPGLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSL------ 192
            |.....|....:||.|..||..      .|:|.||..:|    |||...|:.|.||.:.
  Rat    14 AATAAVGGSAGEQEGAMVAAAQ------GAAAAAGSGSG----GGSAPGGTEGGSTEAEGAKIDA 68

  Fly   193 ------SGGSGSDP----------APGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQ 241
                  .|.|.|.|          ...|:|:|||||.|:...||:||:.||.|.|..:..||:|.
  Rat    69 SKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITG 133

  Fly   242 RSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKT----KKIFVGGVSQDT 302
            |||||||:.|:|..:|:||:....|.|:||.||||.|       :|.||    |||||||:|.||
  Rat   134 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-------KAMKTKEPVKKIFVGGLSPDT 191

  Fly   303 SAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQ 367
            ..|:::.||..||.||...:.||.:|.:.|||.|:||:.|:.|.::.|..:|.:...|.|.|.|.
  Rat   192 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 256

  Fly   368 PKEAVTPAAQLLQKRIMLGTLGVQLPTAPGQLIGARGAG 406
            .||.       .|::...|:.|       |....|||.|
  Rat   257 SKEQ-------YQQQQQWGSRG-------GFAGRARGRG 281

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	39/73 (53%)
		RRM2_MSI	292..365	CDD:240769	31/72 (43%)
Hnrnpd	NP_077380.2	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..89		23/84 (27%)
		CBFNT	<55..76	CDD:311868	3/20 (15%)
		RRM1_hnRNPD	97..170	CDD:410150	38/72 (53%)
		RRM2_hnRNPD	181..255	CDD:241027	32/73 (44%)