DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Hnrnpa0

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_084148.1 Gene:Hnrnpa0 / 77134 MGIID:1924384 Length:305 Species:Mus musculus


Alignment Length:206 Identity:78/206 - (37%)
Similarity:115/206 - (55%) Gaps:16/206 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            |||:|||:.|||...|:.:|..|||:||.:::.:|.|:|||.|||:|:......:..:....|.:
Mouse     8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAV 72

  Fly   269 DGKKIDPKHATPKN---RPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKR 330
            ||..::.|.|..:.   ||....|.||:||||:..|.:..::..:|||||.||:..::.|:|:.:
Mouse    73 DGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGK 137

  Fly   331 HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTA 395
            .||||||.|::.|..|:...:.||.|:..:||.|||.|||           .|..|..|.:  .|
Mouse   138 KRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKE-----------DIHAGGGGAR--AA 189

  Fly   396 PGQLIGARGAG 406
            .|...|.||.|
Mouse   190 RGGRGGGRGRG 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 29/73 (40%)
RRM2_MSI 292..365 CDD:240769 29/72 (40%)
Hnrnpa0NP_084148.1 RRM1_hnRNPA0 5..83 CDD:409764 29/74 (39%)
RRM_SF 99..178 CDD:473069 35/89 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..211 9/25 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 265..305
Blue background indicates that the domain is not in the aligned region.

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