DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and ncl

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001070120.3 Gene:ncl / 767714 ZFINID:ZDB-GENE-030131-6986 Length:704 Species:Danio rerio


Alignment Length:464 Identity:95/464 - (20%)
Similarity:166/464 - (35%) Gaps:139/464 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PPPLQAAAAA--AAAVPNLRFQ---------------------TP---IKAFACLTAATRSVSEM 57
            |||.:|||||  ||..|..:.:                     ||   .|....:.|...|..|.
Zfish   177 PPPKKAAAAAKPAAKAPAAKEESDEEEDDDEEEDDSEEEEMDTTPAPKAKKAGMVKAKEESEEED 241

  Fly    58 N-----------------------ATSLYAGN-PMENAAAAAAAAAAGLIDPHHNRD---LHQAL 95
            :                       .|....|. |.:.|.......:..|.:.::|:|   |..|:
Zfish   242 DDDEEDDDDEEEEETPATPAKRKAETKKEKGTPPAKKAKTDGEGFSLFLGNLNNNKDFDELKSAI 306

  Fly    96 VASIANNSV----AAIGGGLTTAAVLKSAAQQSQQAVQQNQNAVVVTP-------GLEQPKQEPA 149
            ....:...:    ..:||......|..::.::.|:|::.|...::..|       ..|..::...
Zfish   307 SKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALELNGKKLLGQPVKLDKARSKENSQENKK 371

  Fly   150 QQAALALLKENVNAS--------------------AGAGQNNG------------QAAMGGSNKS 182
            ::.|..|..:|:..|                    ...|.:.|            :.|:..:..|
Zfish   372 ERDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGS 436

  Fly   183 GSSGRS-------TPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVT 240
            ...|||       ..|..||.|:..|...|.|..|::..|.|.|:   ::|.....:.|.::  .
Zfish   437 DVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQ---SVFEKAVSIRIPQN--N 496

  Fly   241 QRSRGFGFITFQEPCTVEKVLKVPIHT-LDGKKIDPKHATPKNRPR------QANKTKKIFVGGV 298
            .|.:|:.|:.|:.....::.|:...:| ::|:.|..:: :..:|.|      .:..||.:||.|:
Zfish   497 GRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEY-SQNDRERGGGGRGNSGPTKTLFVKGL 560

  Fly   299 SQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVEC 363
            |.||:.:.:|..|.  |.:...: ..|:.|...:|||||.|:||.                  :|
Zfish   561 SDDTTDQTLKDSFD--GAIAARI-ATDRDTGSSKGFGFVDFDNEQ------------------DC 604

  Fly   364 KKAQPKEAV 372
            |.|  |||:
Zfish   605 KAA--KEAM 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 16/74 (22%)
RRM2_MSI 292..365 CDD:240769 20/72 (28%)
nclNP_001070120.3 None

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