DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and TIA1

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_071505.2 Gene:TIA1 / 7072 HGNCID:11802 Length:386 Species:Homo sapiens


Alignment Length:346 Identity:78/346 - (22%)
Similarity:132/346 - (38%) Gaps:84/346 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 ENVNASAGAGQNNGQAAMG-----------GSNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSW 212
            |:.:|:|.....||:..||           .|.|..:|  |:..:|.....|..  .:|||.||.
Human    55 EHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTS--SSTVVSTQRSQDHF--HVFVGDLSP 115

  Fly   213 QTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVL-KVPIHTLDGKKIDPK 276
            :.:::.:|..|..||.::|..::||..|.:|:|:||::|......|..: ::....|.|::|...
Human   116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180

  Fly   277 HATPK---------------------NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEET 320
            .||.|                     |:...:|.|  ::.|||:...:.:.::..||.||.:.|.
Human   181 WATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCT--VYCGGVTSGLTEQLMRQTFSPFGQIMEI 243

  Fly   321 VMLMDQQTKRHRGFGFVTF-ENEDVVDRVCEIHFHTIKNKKVECK-KAQPKEAVTPAAQLLQKRI 383
            .:..|      :|:.||.| .:|.....:..::..||:...|:|. ..:..:.:.|..|..|   
Human   244 RVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQ--- 299

  Fly   384 MLGTLGVQLPTAP-GQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQNPFQVQN 447
                :|...|... ||..|                             .|||......|.:||..
Human   300 ----IGYPQPYGQWGQWYG-----------------------------NAQQIGQYMPNGWQVPA 331

  Fly   448 AAAAASIANQAGFGKLLTTYP 468
            ........||.||.:..::.|
Human   332 YGMYGQAWNQQGFNQTQSSAP 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 22/74 (30%)
RRM2_MSI 292..365 CDD:240769 18/74 (24%)
TIA1NP_071505.2 RRM1_TIA1 8..81 CDD:410027 7/25 (28%)
RRM2_TIA1 104..181 CDD:410030 23/78 (29%)
RRM3_TIAR 214..286 CDD:241064 19/79 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..386
Blue background indicates that the domain is not in the aligned region.

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