Protein Alignment msi and Dazl

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001400853.1
• Gene: Dazl / 680486
• RGDID: 1591714
• Length: 298
• Species: Rattus norvegicus
• Alignment Length: 215
• Identity: 50/215 - (23%)
• Similarity: 90/215 - (41%)
• Gaps: 60/215 - (27%)

  Fly   293 IFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE--IHFHT 355
            :||||:.......|::::|:::|.|:|..::.| :|...:|:|||:|.|:..|.::.|  |:||
  Rat    42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIVESQINFH- 104

  Fly   356 IKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAPGQL--IGARGAGVATMNPLAMLQN 418
              .||::...|..|:.:  ....:|.|.::..     |..|.|.  :.:.......|.|..|:..
  Rat   105 --GKKLKLGPAIRKQNL--CTYHVQPRPLIFN-----PPPPPQFQSVWSSPNAETYMQPPTMMNP 160

  Fly   419 PTQLLQS----PAAAAAAQQAALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAP 479
            .||.:|:    |:             :|.||                  :|.| |..:::.:..|
  Rat   161 ITQYVQAYPPYPS-------------SPVQV------------------ITGY-QLPVYNYQMPP 193

  Fly   480 ---------YSIPASAATAN 490
                     |.||.:..|.|
  Rat   194 QWPAGEQRSYVIPPAYTTVN 213

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069
		RRM2_MSI	292..365	CDD:240769	24/73 (33%)
Dazl	NP_001400853.1	RRM_DAZL	35..116	CDD:410073	25/77 (32%)
		PABP-1234	<40..208	CDD:130689	48/208 (23%)