DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and HNRNPA1L3

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001383170.1 Gene:HNRNPA1L3 / 642659 HGNCID:48778 Length:320 Species:Homo sapiens


Alignment Length:209 Identity:77/209 - (36%)
Similarity:121/209 - (57%) Gaps:20/209 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKV---LKVPI 265
            |||:||||::|:.:.|:.:|..:||:||.::|:||.|:|||||||:|:   .|||:|   :....
Human    15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY---ATVEEVDAAMNARP 76

  Fly   266 HTLDGKKIDPKHATPK---NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQ 327
            |.:||:.::||.|..:   .||......|||||||:.:||....::.||.|:|.:|...::.|:.
Human    77 HKVDGRVVEPKRAVSREDSQRPDAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 141

  Fly   328 TKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQL 392
            :.:.|||.||||::.|.||::....:||:.....|.:||..|:.:..|:...:.|...|..|   
Human   142 SGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFG--- 203

  Fly   393 PTAPGQLIGARGAG 406
                    |.||.|
Human   204 --------GGRGGG 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 35/76 (46%)
RRM2_MSI 292..365 CDD:240769 27/72 (38%)
HNRNPA1L3NP_001383170.1 RRM1_hnRNPA1 12..92 CDD:410154 36/79 (46%)
RRM2_hnRNPA3 105..184 CDD:409996 30/78 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..218 9/39 (23%)
HnRNPA1 255..292 CDD:463312
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 271..320
Blue background indicates that the domain is not in the aligned region.

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