DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Safb

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_017452111.1 Gene:Safb / 64196 RGDID:620613 Length:942 Species:Rattus norvegicus


Alignment Length:333 Identity:74/333 - (22%)
Similarity:115/333 - (34%) Gaps:77/333 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 ALVASIANNSVAAIGGGL---TTAAVLKSAAQQSQQAVQ--QNQNAVVVTPGLEQPKQEPAQQAA 153
            ||:|.:......|.|||.   .....|:...:||..|.|  :..:..:|......|..||...  
  Rat   311 ALLAVVKREPAEAPGGGTGMDREPVGLEEPVEQSSTAAQLPETTSQELVRAPTAAPSPEPRDS-- 373

  Fly   154 LALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGS----------GSDPAPGKLFVG 208
                |::|...|....|:..||...|:.|..:.:...|:...|          |........:|.
  Rat   374 ----KDDVKKFAFDACNDVPAAPKESSASEGADQKMSSVEDDSDTKRLSREEKGRSSCGRNFWVS 434

  Fly   209 GLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIH----TLD 269
            |||..|.:..||..|:.:|.|....::.:..:..:|.:||:|..   |.|:..|...|    .|.
  Rat   435 GLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMS---TAEEATKCINHLHKTELH 496

  Fly   270 GKKI--------------------DPKHATPKNRPRQAN-----------KTKKIFVGGVSQDTS 303
            ||.|                    |.|........|.||           ..||...|...:...
  Rat   497 GKMISVEKAKSEPAGKRVPDRRDGDSKKEKTSTSDRSANLKREEKGDRKDDAKKTDDGSTEKSKD 561

  Fly   304 AEEVKAYFSQFGPVEETVMLMDQQTKR-HRGFGFVTFENEDVVDRVCEIHFHTIK--NKKVECKK 365
            |::.|.     ||.|.:     :.||. .||     .|...|:|:...:...::|  ..|....|
  Rat   562 ADDQKP-----GPSERS-----RTTKSGSRG-----TERTVVMDKSKGVPVISVKTSGSKERASK 611

  Fly   366 AQPKEAVT 373
            :|.:::|:
  Rat   612 SQDRKSVS 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 24/97 (25%)
RRM2_MSI 292..365 CDD:240769 16/75 (21%)
SafbXP_017452111.1 SAP 31..65 CDD:460424
PLN03124 32..>183 CDD:215591
RRM_SAFB1_SAFB2 428..503 CDD:410080 22/77 (29%)
RcnB <758..>847 CDD:444206
Blue background indicates that the domain is not in the aligned region.

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