DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Rbm38

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_062420.2 Gene:Rbm38 / 56190 MGIID:1889294 Length:237 Species:Mus musculus


Alignment Length:225 Identity:67/225 - (29%)
Similarity:98/225 - (43%) Gaps:41/225 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTI 356
            ||||||:...|:...::.||..||.:||.|::.|:||.:.||:||||..:....||.|:.....|
Mouse    33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPII 97

  Fly   357 KNKKVECK----KAQPKEAVTPAA---QLLQKRIMLGTLGVQ----LPTA---PGQLIGARGAGV 407
            ..:|....    .|:|:...|..|   |.|...::..|.|:.    .|.|   |..:|.|     
Mouse    98 DGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPAIVQPSVVIPA----- 157

  Fly   408 ATMNPLAMLQNPTQLLQSPAAAAAAQ-QAALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTA 471
               .|:..|.:| .|..:||:.|.|| ..|...|.|:....|||.:.:    |:|     ||.. 
Mouse   158 ---TPVPSLSSP-YLEYTPASPAYAQYPPATYDQYPYAASPAAATSFV----GYG-----YPAA- 208

  Fly   472 LHSVRYAPYSIPASAATANAALM-QAHQAQ 500
                  .|.::.|:|......:. ||.|.|
Mouse   209 ------VPQALSAAAPAGTTFVQYQAPQLQ 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069
RRM2_MSI 292..365 CDD:240769 28/76 (37%)
Rbm38NP_062420.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
RRM_RBM24_RBM38_like 32..107 CDD:409818 28/73 (38%)
PABP-1234 <44..>182 CDD:130689 43/146 (29%)
Blue background indicates that the domain is not in the aligned region.

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