DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and dazap1

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_021335308.1 Gene:dazap1 / 561459 ZFINID:ZDB-GENE-070212-1 Length:469 Species:Danio rerio


Alignment Length:451 Identity:149/451 - (33%)
Similarity:203/451 - (45%) Gaps:67/451 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHT 267
            ||||||||.|.|:.:.|:.||:.:|.|.|.:||||..|.:||||||:.|::|..|..||....|.
Zfish    23 GKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDTKPHN 87

  Fly   268 LDGKKIDPKHATP--------------KNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVE 318
            |||:.||||..||              |.....:||:|||||||:..:....|::.||::||.|.
Zfish    88 LDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVT 152

  Fly   319 ETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLL---- 379
            |.||:.|.:.:|.|||||:|||.|..||:...:|||.|..||||.|||:|:::..||...|    
Zfish   153 EVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQ 217

  Fly   380 --QKRIMLGTLGVQLPTAP--GQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQ 440
              .:.|:....|.....||  .|..|.:|..|:|..|||....|.     ||...|..||    .
Zfish   218 WGPRAIISAANGWAAQPAPTWQQSYGPQGVWVSTGQPLAGYGPPL-----PAGRGAPAQA----P 273

  Fly   441 NPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYS-------------IPASAATANAA 492
            :||.....||..:    .||| ....|||....:.....||             :|...||..|.
Zfish   274 SPFNAFLVAAPPT----GGFG-APQGYPQQGFSTQPQFGYSFGTPQGDQFVAQGMPPPPATPGAG 333

  Fly   493 LM------QAHQAQSVAAAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQAHS 551
            .:      ...|..|.||.|.......|.::..:..|........ :.|:...|...:|::...:
Zfish   334 PLGFAPATTPSQDLSKAAPAQPDFSYSQYEYLLRCSTEEGKPFMV-ELQEGLGNYPQDPSAYGPT 397

  Fly   552 AAAAAALAANAANGAG-----AAGAHSLAAAAQQAGLMAGNPLNAAAAAAAAAANPAAAYS 607
            ..:...:.......||     :|..||.|..:|.....      |||.:|.::..||||.|
Zfish   398 RPSHTYVQEEQGYSAGYGQDLSAFGHSFADPSQPTASY------AAAPSAPSSGAPAAASS 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 39/73 (53%)
RRM2_MSI 292..365 CDD:240769 36/72 (50%)
dazap1XP_021335308.1 RRM1_DAZAP1 24..105 CDD:409988 41/80 (51%)
RRM2_DAZAP1 127..202 CDD:409765 38/74 (51%)
PRK10263 <220..>430 CDD:236669 50/224 (22%)

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