DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and RBM23

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001339693.1 Gene:RBM23 / 55147 HGNCID:20155 Length:483 Species:Homo sapiens


Alignment Length:457 Identity:101/457 - (22%)
Similarity:168/457 - (36%) Gaps:147/457 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 VVVTPGLEQP-KQEPAQQAALALLKENVNASAGAGQNNGQAAMGGS--------------NKS-- 182
            :|:...||.| |:|..:|....:.|:..:.:..:..|:|....|.|              |||  
Human    52 IVIEAMLEAPYKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHNKSRD 116

  Fly   183 -------------------------------------GSSGRS------------TPSLSGG--S 196
                                                 ||..||            :|.|:.|  .
Human   117 RKRSRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRY 181

  Fly   197 GSDPAP----------------------GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPV 239
            |...:|                      ..:|...|:.:.....|:::|:..|.|.||.|:.|..
Human   182 GHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN 246

  Fly   240 TQRSRGFGFITFQE----PCTV----EKVLKVPIHTLDGKKIDPKHATPKNR-PRQANKTKK--- 292
            ::||:|..::.|.|    |..:    :::|.|||       |.......||| ...||..:|   
Human   247 SRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPI-------IVQASQAEKNRLAAMANNLQKGNG 304

  Fly   293 ----IFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE-IH 352
                ::||.:..:.:.:.::..|..||.::..|::.|..|.|.:|:||:||.:.:...|..| ::
Human   305 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 369

  Fly   353 FHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAPGQL-IGARGAGVATMNPLAM- 415
            ...:..:.:....             :.:|:..|| .:..|....:| :|:.|.....|..||. 
Human   370 GFELAGRPMRVGH-------------VTERLDGGT-DITFPDGDQELDLGSAGGRFQLMAKLAEG 420

  Fly   416 --LQNPTQLLQSPAAAAAAQQAALISQN---PFQVQNAAA------AASIANQA-GFGKLLTTYP 468
              :|.|:   .:.||||||.|||.:..|   |....|.||      |.::|:|. ....|.|  |
Human   421 AGIQLPS---TAAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQCFQLSSLFT--P 480

  Fly   469 QT 470
            ||
Human   481 QT 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 21/81 (26%)
RRM2_MSI 292..365 CDD:240769 17/80 (21%)
RBM23NP_001339693.1 SF-CC1 143..482 CDD:273721 84/364 (23%)

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