Protein Alignment msi and msi1b

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001013534.1
• Gene: msi1b / 541389
• ZFINID: ZDB-GENE-050320-86
• Length: 330
• Species: Danio rerio
• Alignment Length: 323
• Identity: 138/323 - (42%)
• Similarity: 184/323 - (56%)
• Gaps: 42/323 - (13%)

  Fly   184 SSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGF 248
            |.|..:...|..|..||.  |:|:|||||||:.:.||:||..||.|.:.::|:||||:|||||||
Zfish     3 SEGSQSNLSSSDSPHDPC--KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGF 65

  Fly   249 ITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN-RPRQANKTKKIFVGGVSQDTSAEEVKAYFS 312
            :||.:...|:|||....|.||.|.||||.|.|:. :|:...:||||||||:|.:|:.|:||.||.
Zfish    66 VTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFD 130

  Fly   313 QFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPA-- 375
            |||.|::.:::.|:.|.||||||||||||||||::|||||||.|.||.||||||||||.::|.
Zfish   131 QFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGS 195

  Fly   376 ----AQLLQKRIMLGTLGVQLPTAPG-QLIGARGAGVATMNPLAMLQNPTQLL--QSPAAAAAAQ 433
                |:::...:....||:.:...|| |.....|....::.|....|.|...|  .:|.|||||.
Zfish   196 SRGRARVMPYGMDAFMLGIGMLGYPGFQATTYAGRSYTSLTPGYTYQFPAIPLTAYNPMAAAAAA 260

  Fly   434 QAALISQNPFQ-------------------------VQNAAAAASIANQAGF-----GKLLTT 466
            .|.:....|.:                         |.:..:|||.|...||     |.|:.|
Zfish   261 AAVVRGSTPSRSAGFLGTSSPGPMADLYGTANQESAVSSYLSAASPAPSTGFSHSLGGPLIAT 323

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	39/70 (56%)
		RRM2_MSI	292..365	CDD:240769	48/72 (67%)
msi1b	NP_001013534.1	RRM	<16..161	CDD:223796	80/146 (55%)
		RRM1_MSI1	20..96	CDD:241203	42/77 (55%)
		RRM2_MSI	110..183	CDD:240769	48/72 (67%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000417
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_101082
Panther	1	1.100	-	-	O	PTHR48032
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X310
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	6	5.910