DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Hrb87F

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster


Alignment Length:170 Identity:67/170 - (39%)
Similarity:105/170 - (61%) Gaps:3/170 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            |||:|||.::|:.|.||.:|..:|.:.||::||||.|:|||||||||:.:...::.......|.:
  Fly    25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKI 89

  Fly   269 DGKKIDPKHATPK---NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKR 330
            ||:.::||.|.|:   :.|......||:||||:..|...|.::.||..||.:....::.|:.|.:
  Fly    90 DGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGK 154

  Fly   331 HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
            .|||.|:.|::.|.||::.....|:||||.::.|||..|:
  Fly   155 KRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQ 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 33/73 (45%)
RRM2_MSI 292..365 CDD:240769 26/72 (36%)
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 34/76 (45%)
RRM_SF 116..188 CDD:473069 26/71 (37%)

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