Protein Alignment msi and Rb97D

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_524520.1
• Gene: Rb97D / 43231
• FlyBaseID: FBgn0004903
• Length: 471
• Species: Drosophila melanogaster
• Alignment Length: 467
• Identity: 124/467 - (26%)
• Similarity: 179/467 - (38%)
• Gaps: 111/467 - (23%)

  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            |||:|||:..|:.:.||.::..:|.|.||::|:|..|:|||||||||:.:...|::..:...|.:
  Fly    33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHII 97

  Fly   269 DGKKIDPKHATPKNRP-RQANKT----KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQT 328
            |||.::.|.|.|  || |::.:|    ||:||||:..:...|.::.||.|||.|....:|.|:.|
  Fly    98 DGKTVEAKRALP--RPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTT 160

  Fly   329 KRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA----QPKEAVTPAAQLLQKRIMLGTLG 389
            .:.|||.||.|::.|.||:......|.||...|:.||:    ..||...|           |.|.
  Fly   161 GKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQP-----------GGLA 214

  Fly   390 VQLPTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPA--AAAAAQQAALISQNPFQVQNAAAAA 452
            ..:..:..|....:|.|         .|.|...:|:|:  .....|||    ..|:|.|...|..
  Fly   215 NAIKPSLNQQQQQQGGG---------QQPPNGNMQAPSFRPPVPPQQA----MGPYQQQPPPAPM 266

  Fly   453 SIANQAGFG-------KLLTTYPQTALHSVR-YAPYSIPAS-------AATANAALMQAHQ---- 498
            | |....|.       .:...|.|.....:. :.||..|..       .....|....|:|
  Fly   267 S-APPPNFNYWGPPPPAMPPYYQQPPPQQMNGWGPYPPPQQNGWNAPPPPPPGAQQWHANQWGCP 330

  Fly   499 --AQSV------------------------------AAAAHHHQQQQQQQHHHQQQTHNAHVAAA 531
              .|.|                              .||...||||..     ||.|...:....
  Fly   331 PPVQQVPPVGAVPPPMGHNGPPPTAPGNWNMPPPVPGAAPPSHQQQSS-----QQPTPQPNFGTG 390

  Fly   532 QQQQ-----QSHHNAVSN--------PASQAHSAAAAAALAANAA----NGAGAAGAHSLAAAAQ 579
            .||.     ..|:|..:|        |.:..|:....|....||.    ||:......:.|....
  Fly   391 YQQNYGGGPSKHNNMNANRMNPYSAGPPNSYHTPQPPAYTGYNAGPLPPNGSVPPPTGAKAVGVS 455

  Fly   580 QAGLMAGNPLNA 591
            ...:..|...|:
  Fly   456 NGSVATGGSANS 467

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	31/73 (42%)
		RRM2_MSI	292..365	CDD:240769	28/72 (39%)
Rb97D	NP_524520.1	RRM2_hnRNPA_like	124..196	CDD:409766	28/71 (39%)
		RRM_SF	33..110	CDD:473069	33/78 (42%)