DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and CG6937

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_651066.2 Gene:CG6937 / 42662 FlyBaseID:FBgn0038989 Length:356 Species:Drosophila melanogaster


Alignment Length:179 Identity:40/179 - (22%)
Similarity:74/179 - (41%) Gaps:34/179 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 PGLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPG 203
            |.:::||.:..::.:..  |:.::|:.       ....|...|..:..|  |....|    |..|
  Fly     2 PPVKKPKAQKIEKQSTP--KKPIDAAK-------NVVSGQLKKKVTKAR--PQKPKG----PERG 51

  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            .:.|..|.......:|::||..||.|..|.:.:...|..|:|:.|:.|:.|    :|.||...|:
  Fly    52 VVIVKHLPHGFFEQQLRQYFRQFGRVLRVRLARSLRTGNSKGYAFVEFEYP----EVAKVAADTM 112

  Fly   269 DG-----KKIDPKHATPKNR---------PRQANKT-KKIFVGGVSQDT 302
            |.     |.:...:..|:.:         .:..||. |:|:|..:::.|
  Fly   113 DNYLMFQKVVKATYIPPEKQTLNFFRTSLKKVVNKAGKEIYVSDLTKAT 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 21/78 (27%)
RRM2_MSI 292..365 CDD:240769 3/11 (27%)
CG6937NP_651066.2 RRM_NIFK_like 52..125 CDD:409748 21/76 (28%)
RRN3 <242..>306 CDD:461623
Blue background indicates that the domain is not in the aligned region.

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