Protein Alignment msi and Syp

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Alignment Length: 619
• Identity: 126/619 - (20%)
• Similarity: 201/619 - (32%)
• Gaps: 190/619 - (30%)

  Fly    99 IANNSVAAIGGGLTTAAVLKSAAQQSQQAVQQNQNAVVVTPGLEQPKQEPAQQAALALLKENVNA 163
            ::|.|....|       |:|:..|:| :|.||...|.....|.::.|        :..:.|....
  Fly   131 VSNKSAYLCG-------VMKTYRQKS-RASQQGVAAPATVKGPDEDK--------IKKILERTGY 179

  Fly   164 SAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPG---KLFVGGLSWQTSSDKLKEYFNM 225
            :...  ..||...||         ..|...|.     .||   ::|.|.:......|:|...|..
  Fly   180 TLDV--TTGQRKYGG---------PPPHWEGN-----VPGNGCEVFCGKIPKDMYEDELIPLFEN 228

  Fly   226 FGTVTDVLIMKDPVTQRSRGFGFITF--QEPC--TVEKVLKVPIHTLDGKKID------------ 274
            .|.:.|:.:|.||:|..:||:.|:||  :|..  .|.::....|.|  ||||.
  Fly   229 CGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLNDFEIRT--GKKIGVTISFNNHRLFV 291

  Fly   275 ---PKH----------------------------------------------------------- 277
               ||:
  Fly   292 GNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIK 356

  Fly   278 ----------ATPKNRP--RQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKR 330
                      |.|:..|  :..:|.|.::|..::||.|.:::|..|.|:|.||        :.|:
  Fly   357 VWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVE--------RVKK 413

  Fly   331 HRGFGFVTFENED-VVDRVCEIHFHTIKNKKVECKKAQP------KEAVTPAAQLLQKRIMLGTL 388
            .:.:.|:.||:.| .|:.:..::...|....:|...|:|      ||.:..|.   ::|:|
  Fly   414 IKDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRAR---ERRMM---- 471

  Fly   389 GVQLPTAPGQLIGARG--AGVATMNPLAMLQ--NPTQLLQSPAAAAAAQQAALISQNPFQVQNAA 449
                     |::.||.  .|..|::|...|.  :|:.:..:|....|...........:......
  Fly   472 ---------QMMQARPGIVGFETLSPYRNLSPTHPSIMSLTPMRPGARMPLRTPIPREYDYFYDF 527

  Fly   450 AAASIANQAG-FGKLLTTYPQTAL---HSVRYAPYS-------------------IPASAATANA 491
            ...|...|.| ||..::.|.....   ....|..|.                   :|.||..:..
  Fly   528 FGFSDYRQGGSFGNNVSYYDDMYRWIDGDYNYYDYPNGGGGGSGGGGGSVSGGTVLPLSAGGSQN 592

  Fly   492 ALMQAHQ--AQSVAAAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQAHSAAA 554
            :.|.:.|  |:..|:..............|........| ..|:...|...|.:.|  ||..|||
  Fly   593 SPMASGQRSARGSASGPSASPSLMGVGRGHGITVPRGRV-VGQRGSISRLGAQTVP--QAAGAAA 654

  Fly   555 AAALAANAANGAGAAGAHSLAAAAQQAGLMAGNP 588
            ||..||.|....||.|..:.||.....|::...|
  Fly   655 AAGQAAAAVAQRGATGQGAPAATGGFRGVLPTRP 688

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	24/89 (27%)
		RRM2_MSI	292..365	CDD:240769	18/73 (25%)
Syp	NP_001262777.1	RRM1_hnRNPR_like	205..283	CDD:240695	24/79 (30%)
		RRM2_hnRNPR_like	286..367	CDD:240696	2/80 (3%)
		RRM3_hnRNPR_like	381..452	CDD:240697	20/78 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463986
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840