Protein Alignment msi and Rbp4

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_476935.1
• Gene: Rbp4 / 41668
• FlyBaseID: FBgn0010258
• Length: 428
• Species: Drosophila melanogaster
• Alignment Length: 399
• Identity: 108/399 - (27%)
• Similarity: 167/399 - (41%)
• Gaps: 74/399 - (18%)

  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            |:|:||||.||:.:.|:.:|:.||.|.|.::::|||:..||||||:|:.:|.:||.|.:...||:
  Fly    33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRARPHTI 97

  Fly   269 DGKKIDPKHATPKNRPRQAN----------------KTKKIFVGGVSQDTSAEEVKAYFSQFGPV 317
            |.|.::.|||.|:...::..                .:|:||:||:.:......|:.||||||||
  Fly    98 DNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGPV 162

  Fly   318 EETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKR 382
            ....:|||::|.|.|.|||:.|.:....::......|.|....||.|::..|     |.:..:..
  Fly   163 ASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRSTQK-----ADRRFRFP 222

  Fly   383 IMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNP--TQLLQSPAAAAAAQQAALISQNPFQV 445
            |........:|..|     |........||   ..||  .|.:..|:|........:|...|...
  Fly   223 IFSSVRAGYIPPQP-----ATADSYNYNNP---NYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPT 279

  Fly   446 QNAAAAASIANQA-------GFG-KLLTTYPQTALHSVRYAPYSIPASAATANAALMQAHQAQSV 502
            .....|||:.:|.       |.| .:.::||:|.::|.                   |...:..|
  Fly   280 PGQNMAASLPSQQLAEHSLNGHGPDMWSSYPKTGIYSA-------------------QEWTSSKV 325

  Fly   503 A----AAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVS----NPASQAHSAAAAAALA 559
            |    .|.|.|.|.....        .|.:...:.|..:.:|.:.    ..|.:...|.....|.
  Fly   326 AEWGPKAGHKHAQTSTND--------RAKIDLKELQAATFNNKLDFGARGDADRMSGAGLGLGLT 382

  Fly   560 ANAANGAGA 568
            ..||.|.||
  Fly   383 GGAAVGVGA 391

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	33/73 (45%)
		RRM2_MSI	292..365	CDD:240769	27/72 (38%)
Rbp4	NP_476935.1	RRM_SF	34..105	CDD:473069	31/70 (44%)
		RRM2_hnRNPA_like	137..209	CDD:409766	27/71 (38%)