Protein Alignment msi and sqd

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 240
• Identity: 86/240 - (35%)
• Similarity: 124/240 - (51%)
• Gaps: 28/240 - (11%)

  Fly   166 GAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVT 230
            |.|..||.|...||....|..:     |..||......|||||||||:|:..:|:::|..:|.:.
  Fly    24 GPGSENGDAGAAGSTNGSSDNQ-----SAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIE 83

  Fly   231 DVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFV 295
            .:.:..||.|.|||||.||.|.....::||.....|.::.||:|||.|..::        .||||
  Fly    84 SINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARH--------GKIFV 140

  Fly   296 GGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK 360
            ||::.:.|.||:|.||.|||.:.|..|..|:|..:.:||.|:||::|.||..:.:.....|..|:
  Fly   141 GGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKE 205

  Fly   361 VECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAP-GQLIGARG 404
            |:.|:|.||.         :.::|.|..|     .| |.:.|.||
  Fly   206 VDVKRATPKP---------ENQMMGGMRG-----GPRGGMRGGRG 236

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	32/73 (44%)
		RRM2_MSI	292..365	CDD:240769	30/72 (42%)
sqd	NP_731825.1	RRM1_hnRNPA_hnRNPD_like	58..129	CDD:409763	29/70 (41%)
		RRM2_hnRNPD_like	137..211	CDD:240775	31/73 (42%)