Protein Alignment msi and hnrnpa1a

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001428354.1
• Gene: hnrnpa1a / 393467
• ZFINID: ZDB-GENE-040426-1546
• Length: 417
• Species: Danio rerio
• Alignment Length: 206
• Identity: 70/206 - (33%)
• Similarity: 120/206 - (58%)
• Gaps: 23/206 - (11%)

  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            |||:||||::|:.:.|:.:|..:||:||.::|:||.|:|||||||:|:.....|:..:....|.:
Zfish    39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDARPHKV 103

  Fly   269 DGKKIDPKHATPK---NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKR 330
            ||:.::||.|..:   ::|...:..||:||||:.:||..|.::.||.|||.::|..::.::.:.:
Zfish   104 DGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDK 168

  Fly   331 HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTA 395
            .|||.|:||::.|.|||:....:||:.....|.:||..:|.:        .|:.:.:.
Zfish   169 RRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREEM--------NRVSMNSR------- 218

  Fly   396 PGQLIGARGAG 406
                 |.||.|
Zfish   219 -----GGRGGG 224

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	32/73 (44%)
		RRM2_MSI	292..365	CDD:240769	27/72 (38%)
hnrnpa1a	NP_001428354.1	None