Protein Alignment msi and CG3335

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_648337.1
• Gene: CG3335 / 39119
• FlyBaseID: FBgn0036018
• Length: 918
• Species: Drosophila melanogaster
• Alignment Length: 262
• Identity: 63/262 - (24%)
• Similarity: 105/262 - (40%)
• Gaps: 58/262 - (22%)

  Fly   144 PKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGKLFVG 208
            ||.||..       ||.|........|:.:.....|....:.....|:.:           ||:.
  Fly   638 PKSEPKP-------KEEVKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTT-----------LFLR 684

  Fly   209 GLSWQTSSDKLKEYFNMFGTVTDVLIMK--DPVTQR---SRGFGFITFQEPCTVEKVLK-VPIHT 267
            .|:::|..:.::::|...|::..|.|.|  ||...|   |.|:|||.|::....|..|| :.:..
  Fly   685 NLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALKNLQLTH 749

  Fly   268 LDGKKIDPKHA-----TPKN---RPRQANKTK----KIFVGGVSQDTSAEEVKAYFSQFGPVEET 320
            :||..::.|.:     |..|   :.|.|::.|    ||.|..:.......||:..|..||.:...
  Fly   750 IDGNPVELKRSDRVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSL 814

  Fly   321 VMLMDQQT--KRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRI 383
            .:.....|  ..|||||||.:.:                  |.|.|:|  .:|::.:..|..:|:
  Fly   815 RIPKKATTGEDAHRGFGFVDYMS------------------KAEAKRA--FDALSASTHLYGRRL 859

  Fly   384 ML 385
            :|
  Fly   860 VL 861

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	23/76 (30%)
		RRM2_MSI	292..365	CDD:240769	18/74 (24%)
CG3335	NP_648337.1	RRM1_RBM19	2..77	CDD:241008
		RRM_SF	250..314	CDD:302621
		RRM3_RBM19	362..440	CDD:241011
		RRM4_RBM19	552..623	CDD:241013
		RRM	<638..845	CDD:223796	59/244 (24%)
		RRM5_RBM19_like	679..760	CDD:240764	24/91 (26%)
		RRM6_RBM19	785..864	CDD:241015	24/97 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463990
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840