Protein Alignment msi and TBPH

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001163280.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Alignment Length: 498
• Identity: 107/498 - (21%)
• Similarity: 176/498 - (35%)
• Gaps: 108/498 - (21%)

  Fly   142 EQPKQEPAQQ---AALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGS----- 198
            ::|.:.||::   ..|:.|:.....|.|....|.........:|.......||:..|.|.
  Fly    12 DEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFC 76

  Fly   199 -DPAPGK-------------------------LFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKD 237
             .|...|                         |.|.||.|:|:.:.|:|||..:|.|....|.||
  Fly    77 VFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKD 141

  Fly   238 PVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDT 302
            ..:.:|:||||:.|.......:|| ...|.:||:..:.|....|....|.  ..|:|||..::|.
  Fly   142 TKSGQSKGFGFVRFGSYDAQMRVL-TNRHLIDGRWCEVKVPNSKGMGHQV--PCKVFVGRCTEDI 203

  Fly   303 SAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQ 367
            ::::::.|||:||.|.:..:     .:..|.|.||||.:.||...:|. ..|.||...|....|.
  Fly   204 NSDDLREYFSKFGEVTDVFI-----PRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAA 262

  Fly   368 PKEAVTPAAQLLQKRIMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAA 432
            ||     |.|...:::......           .|...|:.:.:|.....||         ....
  Fly   263 PK-----AEQNRNQQVQSYNYN-----------SANSFGMHSYHPQGNHMNP---------GRNG 302

  Fly   433 QQAALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYSIPASAATANAALMQAH 497
            ........|....:||.    :.|.               |::..|.|.:..:....|:.....:
  Fly   303 HHRGNNQHNAHGGENAI----VPNN---------------HNIGTAGYGMGGNNYGGNSGGGYHN 348

  Fly   498 QAQSVAAAAHHHQQ-------QQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQAHSAAAA 555
            ...:.::..:.::|       .:|...|...|.||.:|..:.......|..:.|
  Fly   349 NGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLDMPN----------- 402

  Fly   556 AALAANAANGAGAAGAHSLAAAAQQAGLMAGN-PLNAAAAAAA 597
              |.|...|..|::.::.....:.|:.|...: |:|.|..|||
  Fly   403 --LQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAA 443

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	26/70 (37%)
		RRM2_MSI	292..365	CDD:240769	24/72 (33%)
TBPH	NP_001163280.1	RRM1_TDP43	108..184	CDD:240767	27/76 (36%)
		RRM2_TDP43	192..261	CDD:240768	24/74 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910