DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Rbm38

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_063140362.1 Gene:Rbm38 / 366262 RGDID:1308503 Length:266 Species:Rattus norvegicus


Alignment Length:257 Identity:71/257 - (27%)
Similarity:100/257 - (38%) Gaps:76/257 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGF-------------------- 336
            ||||||:...|:...::.||..||.:||.|::.|:||.:.||:||                    
  Rat    33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFGIVAALEGTQNLNSGRSCSP 97

  Fly   337 ---------VTFENEDVVDRVCEIHFHTIKNKKVECK----KAQPKEAVTPAA---QLLQKRIML 385
                     ||..:....||.|:.....|..:|....    .|:|:...|..|   |.|...::.
  Rat    98 GGREDSAPRVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQ 162

  Fly   386 GTLGVQ----LPTA---PGQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQ-QAALISQNP 442
            .|.|:.    .|.|   |..:|.|        .|:..|.:| .|..:||:.|.|| ..|...|.|
  Rat   163 RTYGLTPHYIYPPAIVQPSVVIPA--------TPVPSLSSP-YLEYTPASPAYAQYPPATYDQYP 218

  Fly   443 FQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYSIPASAATANAAL----MQAHQAQ 500
            :    ||:.|:..:..|:|     ||..       .|   ||.:|||.|..    .||.|.|
  Rat   219 Y----AASPATATSFVGYG-----YPAA-------IP---PALSATAPAGTTFVQYQAPQLQ 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069
RRM2_MSI 292..365 CDD:240769 28/105 (27%)
Rbm38XP_063140362.1 None
Blue background indicates that the domain is not in the aligned region.

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