Protein Alignment msi and Dazap1

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: XP_006241030.1
• Gene: Dazap1 / 362836
• RGDID: 1305280
• Length: 406
• Species: Rattus norvegicus
• Alignment Length: 420
• Identity: 127/420 - (30%)
• Similarity: 183/420 - (43%)
• Gaps: 82/420 - (19%)

  Fly   196 SGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKV 260
            :|:|.. ||||||||.|.|:.:.|:.||:.:|.|.|.:||||..|.:||||||:.|::|..|..|
  Rat     4 AGADEI-GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

  Fly   261 LKVPIHTLDGKKIDPKHATP------KNRPRQ---------ANKTKKIFVGGVSQDTSAEEVKAY 310
            |....|||||:.||||..||      :.||::         ::|:.||||||:..:....|::.|
  Rat    68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREY 132

  Fly   311 FSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVT-- 373
            |.:||.|.|.||:.|.:.:|.|||||:|||:|..||:...:|||.|..||||.|:|:|:::..
  Rat   133 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQA 197

  Fly   374 ---PAAQLLQKRIM------------------LGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQ 417
               |.|.....|:.                  .|..|:.:|.  ||.||..|
  Rat   198 PGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPA--GQAIGGYG------------- 247

  Fly   418 NPTQLLQSPAAAAAAQ-----QAALISQNPF---QVQNAAAAASIANQAGFGKLLTTYPQTALHS 474
                  ..||...|..     .:.::|..|.   ..|..........|..||     |.......
  Rat   248 ------PPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFG-----YGPPPPPP 301

  Fly   475 VRYAPYSIPASAATANAALMQAHQAQSVAAAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHH 539
            .::||..:|...||..||.:......|.||.........|....:.|..:...::...|
  Rat   302 DQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGYGQDLSGFGQ------ 360

  Fly   540 NAVSNPASQ--AHSAAAAAALAANAANGAG 567
             ..|:|:.|  ::...:........|.|:|
  Rat   361 -GFSDPSQQPPSYGGPSVPGSGGPPAGGSG 389

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	37/70 (53%)
		RRM2_MSI	292..365	CDD:240769	36/72 (50%)
Dazap1	XP_006241030.1	RRM1_DAZAP1	11..92	CDD:409988	42/80 (53%)
		RRM2_DAZAP1	111..190	CDD:409765	39/78 (50%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4205
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000417
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X310
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.810