DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Msi2

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001417161.1 Gene:Msi2 / 360596 RGDID:1560397 Length:354 Species:Rattus norvegicus


Alignment Length:453 Identity:169/453 - (37%)
Similarity:221/453 - (48%) Gaps:131/453 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 SGSSGRSTPSLSGGSGSDPA--PGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSR 244
            :||.|.|      ||.:|..  |||:|:||||||||.|.|::||:.||.:.:.::|:||.|:|||
  Rat     4 NGSPGTS------GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSR 62

  Fly   245 GFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKN-RPRQANKTKKIFVGGVSQDTSAEEVK 308
            ||||:||.:|.:|:|||..|.|.||.|.||||.|.|:. :|:...:||||||||:|.:|..|:||
  Rat    63 GFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVK 127

  Fly   309 AYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVT 373
            .||.|||.||:.:::.|:.|.||||||||||||||||::|||||||.|.||.||||||||||.:.
  Rat   128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 192

  Fly   374 PAAQLLQKRIMLGTLGVQLPTAPGQLIGARGAGV---ATMNPLAMLQNPTQLLQSPAAAAAAQQA 435
            |                     ||....|||...   |.|..:.||..|..:             
  Rat   193 P---------------------PGTRGRARGLPYTMDAFMLGMGMLGYPNFV------------- 223

  Fly   436 ALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAP---YSIPASAATANAALMQAH 497
                                  |.:|:   .||       .:||   |..||.....||:...|.
  Rat   224 ----------------------ATYGR---GYP-------GFAPSYGYQFPALLPYLNASFPAAA 256

  Fly   498 QAQSVAAAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSN---PASQAHSAAAAAALA 559
            .. .|||||                     ||||:....:.::|..|   |.|.|.|        
  Rat   257 YG-PVAAAA---------------------VAAARGSVLNSYSAQPNFGAPTSPAGS-------- 291

  Fly   560 ANAANGAGAAGAHS-------LAAAAQQAGLMAGNPLNAAAAAAAAA-----ANP--AAAYSN 608
             |.|...|..||:|       ...|:|.:|:  ||.::||:....:.     |.|  |.|::|
  Rat   292 -NPARPGGFPGANSPGPVADLYGPASQDSGV--GNYISAASPQPGSGFGHGIAGPLIATAFTN 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 43/73 (59%)
RRM2_MSI 292..365 CDD:240769 49/72 (68%)
Msi2NP_001417161.1 None

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