Protein Alignment msi and Caper

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Alignment Length: 407
• Identity: 97/407 - (23%)
• Similarity: 170/407 - (41%)
• Gaps: 72/407 - (17%)

  Fly   150 QQAALALLKENVNASAGAGQNNGQAAMGGSN----KSGSSG--RSTPSLSGGSGSDPAPGKLFVG 208
            |:..|:.::|...:.:.:...|.:..  |:|    :|..:|  |:||:.......|..  .:|..
  Fly   182 QRKRLSPIRERKRSHSRSRDRNSRRR--GTNSPRRRSPPNGADRTTPTELSPEERDAR--TVFCI 242

  Fly   209 GLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTV--------EKVLKVPI 265
            .||.:..:..|:|:|:..|.|.||.::....|:|.:|..:|.|.:|.:|        :::|.|||
  Fly   243 QLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPI 307

  Fly   266 ---HTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQ 327
               || ..:|...::|.|..:|:......:::||.:..:.:.:.::..|..||.::...::||.:
  Fly   308 MVQHT-QAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTE 371

  Fly   328 TKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKA-QPKEAVTPAAQLLQ-----KRIMLG 386
            |.|.:|:||:|:.|.|                  :.||| :.......|.:|::     :|:.:.
  Fly   372 TGRSKGYGFITYHNAD------------------DAKKALEQLNGFELAGRLMKVGNVTERLDMN 418

  Fly   387 T----------LGVQL-PTAPGQLIG--ARGAGVATMNP-----LAMLQNPTQLLQSPAAAAAAQ 433
            |          .|:.| .|...||:.  |.|||:|....     ||....|..|.|...|.:.|.
  Fly   419 TTSLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAANALLATAPQPAPLQQQEVAPSIAT 483

  Fly   434 QAALISQ--NPFQVQNAAAAASIANQ-----AGFGKLLTTYPQTALHS-VRYAPYSIPASAATAN 490
            |..::|.  :|....|......|.:.     |..|.:|..:..|..|: ..|.......:|..|.
  Fly   484 QCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPSTTTAVLAV 548

  Fly   491 AALMQAHQAQSVAAAAH 507
            .||.....|..|..||:
  Fly   549 NALHGRWFAGRVITAAY 565

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	24/81 (30%)
		RRM2_MSI	292..365	CDD:240769	15/72 (21%)
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	21/71 (30%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	20/89 (22%)
		RBM39linker	425..500	CDD:292157	20/74 (27%)
		RRM3_RBM39_like	483..567	CDD:240731	19/83 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463938
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930