DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Hrb27C

DIOPT Version :9

Sequence 1:NP_001247303.1 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001162897.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster


Alignment Length:473 Identity:122/473 - (25%)
Similarity:189/473 - (39%) Gaps:123/473 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHT 267
            ||||||||||:|:.:.|..||..||.:.|.::||:..:.|||||||:||.:|..|..||:...||
  Fly     7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHT 71

  Fly   268 LDGKKIDPKHATPKNRPRQANKTK-----KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQ 327
            |||:.||||   |.| ||...|.|     |:|:||:..:.:..:::.:|:::|.|.|.|::.||:
  Fly    72 LDGRTIDPK---PCN-PRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQE 132

  Fly   328 TKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQL 392
            .|:.|||||::||.|..|:.|....:..:..|:||.|||:|::.  ...|......:.|..|   
  Fly   133 KKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDG--SGGQNSNNSTVGGAYG--- 192

  Fly   393 PTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQNPFQVQNAAAAASIANQ 457
              ..|......|...|   |:.|:|.....:..|                               
  Fly   193 --KLGNECSHWGPHHA---PINMMQGQNGQMGGP------------------------------- 221

  Fly   458 AGFGKLLTTYPQTALHSVRYAPYSIPASAATANAALMQAHQAQSVAAAAHHHQQQQQQQHHHQQQ 522
                                 |.::|..|..    :|..:|....:        .||||:.:...
  Fly   222 ---------------------PLNMPIGAPN----MMPGYQGWGTS--------PQQQQYGYGNS 253

  Fly   523 THNAHVA-----------------AAQQQQQSH-----HNAVSNPASQAHSAAAA--------AA 557
            ...::..                 |..||.|.:     :|:.|..|....|...:        .:
  Fly   254 GPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAPSGPSGGGSWNSWNMPPNS 318

  Fly   558 LAANAANGAGAAGAHSLAAAAQ--------QAGLMAGNPLNAAAAAAAAAANPAAAYSNYALA-N 613
            .....|.||||..|..:.:.||        ..|.:.|.| ......:|:.:.....|..|... :
  Fly   319 AGPTGAPGAGAGTATDMYSRAQAWATGGPSTTGPVGGMP-RTGPGNSASKSGSEYDYGGYGSGYD 382

  Fly   614 VDMSSFQGVDWSTMYGMG 631
            .|.|::...:.::.||.|
  Fly   383 YDYSNYVKQEGASNYGAG 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_001247303.1 RRM1_hnRNPA_hnRNPD_like 205..276 CDD:240771 37/70 (53%)
RRM2_MSI 292..365 CDD:240769 25/72 (35%)
Hrb27CNP_001162897.1 RRM1_DAZAP1 8..89 CDD:241018 44/84 (52%)
RRM2_DAZAP1 94..173 CDD:240773 28/78 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463996
Domainoid 1 1.000 82 1.000 Domainoid score I2908
eggNOG 1 0.900 - - E1_KOG4205
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000417
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X310
65.740

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