Protein Alignment msi and Secp43

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_608837.2
• Gene: Secp43 / 33652
• FlyBaseID: FBgn0031607
• Length: 336
• Species: Drosophila melanogaster
• Alignment Length: 387
• Identity: 78/387 - (20%)
• Similarity: 131/387 - (33%)
• Gaps: 128/387 - (33%)

  Fly   204 KLFVGGL-SWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHT 267
            :|::|.| |:.|.:..:..:..|....|.|.:|::..|....|:.|:.|   .:.:..|.. :|.
  Fly     7 QLWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNF---ISDDHALDA-MHK 67

  Fly   268 LDGKKIDPKHATPKNRPRQANKTKK---------IFVGGVSQDTSAEEV-KAYFSQFGPVEETVM 322
            |:||.|...:...:.|...|:.:.|         ::||.:|.|....:: |.:.|:|..::...:
  Fly    68 LNGKPIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFTSIKTAKV 132

  Fly   323 LMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGT 387
            ::| .....:|:|||.|..||                       :.|.|:..    :...|.|||
  Fly   133 ILD-SLGFSKGYGFVRFGIED-----------------------EQKSALYD----MNGYIGLGT 169

  Fly   388 LGVQL----PTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQNPFQVQNA 448
            ..:::    |....:|.||.|.|
  Fly   170 KPIKICNAVPKPKSELGGAVGEG------------------------------------------ 192

  Fly   449 AAAASIANQAGFGKLLTTYPQTALHSVRYAPYSIPASAATANAALMQAHQAQ---SVAAAAHHHQ 510
                  ....|:|.     ..||.....|:.|..|.|.........|.:..|   |:..||.::|
  Fly   193 ------NTNYGYGS-----GMTAAGGTDYSQYYDPTSTYWQGYQAWQGYYEQAGASITDAAAYYQ 246

  Fly   511 QQQQQQHHHQQ------QTHNAHVAAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAANGA 566
            |...|.|.:.|      :..:|..:|..:|||...                   .|:|||||
  Fly   247 QAMSQSHSNPQTLAQHAEAWSAQRSAQYEQQQQQQ-------------------TASAANGA 289

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	19/71 (27%)
		RRM2_MSI	292..365	CDD:240769	16/82 (20%)
Secp43	NP_608837.2	RRM1_SECp43	7..90	CDD:241054	21/86 (24%)
		RRM2_SECp43	99..180	CDD:241056	21/108 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463924
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930