DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and hnrnpa0b

DIOPT Version :9

Sequence 1:NP_001247303.1 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_999871.1 Gene:hnrnpa0b / 334222 ZFINID:ZDB-GENE-030131-6154 Length:314 Species:Danio rerio


Alignment Length:206 Identity:76/206 - (36%)
Similarity:111/206 - (53%) Gaps:24/206 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            |||||||:.||::|.|:.||..||.:||.:::::...||||.|||:|:......:..:....|.:
Zfish     9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAARPHVV 73

  Fly   269 DGKKIDPKHATPK---NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKR 330
            |||.::.|.|..:   .||....|.|||||||:..|...:::..:|||||.:|::.::.|:.|.:
Zfish    74 DGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGK 138

  Fly   331 HRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTA 395
            .||||||.||:.|..|:...:.||.|...|||.|||..|:.:                     .|
Zfish   139 KRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALTKQEI---------------------QA 182

  Fly   396 PGQLIGARGAG 406
            .|...|.||.|
Zfish   183 AGGARGGRGRG 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_001247303.1 RRM1_hnRNPA_hnRNPD_like 205..276 CDD:240771 28/70 (40%)
RRM2_MSI 292..365 CDD:240769 31/72 (43%)
hnrnpa0bNP_999871.1 RRM1_hnRNPA0 6..84 CDD:240772 30/74 (41%)
RRM_SF 100..179 CDD:302621 35/78 (45%)
HnRNPA1 263..294 CDD:288479
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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