DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and rbm38

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001103597.1 Gene:rbm38 / 333991 ZFINID:ZDB-GENE-030131-5923 Length:234 Species:Danio rerio


Alignment Length:213 Identity:57/213 - (26%)
Similarity:90/213 - (42%) Gaps:47/213 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTI 356
            ||||||:...|:...::.||..||.::|.|::.|:||.:.||:||||..::...:|.|:     .
Zfish    26 KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACK-----D 85

  Fly   357 KNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNPTQ 421
            .|..::.:||               .:.|..||.: |.:|   :.....||..::| .::|....
Zfish    86 PNPIIDGRKA---------------NVNLAYLGAK-PRSP---LTGYSTGVQQVHP-TLIQRQYG 130

  Fly   422 LLQSPAAAAAAQQAALI--------SQNP---FQVQNAAAAASIANQAGFGKLLTTYPQTALHSV 475
            |.|......|..|.:|:        |.:|   |....|..|||...|         ||..|  |.
Zfish   131 LSQPYVYPQAVLQPSLLLPTQVSSTSSSPYLDFSTAYAQYAASAFEQ---------YPYAA--SP 184

  Fly   476 RYAPYSIPASAATANAAL 493
            .:..|..|...|..::|:
Zfish   185 GFLSYMYPPGTAGPSSAI 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069
RRM2_MSI 292..365 CDD:240769 25/72 (35%)
rbm38NP_001103597.1 RRM_RBM24_RBM38_like 25..100 CDD:409818 27/93 (29%)
PABP-1234 <37..215 CDD:130689 50/202 (25%)
Blue background indicates that the domain is not in the aligned region.

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