Protein Alignment msi and rbm14a

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001108616.1
• Gene: rbm14a / 323721
• ZFINID: ZDB-GENE-050522-496
• Length: 471
• Species: Danio rerio
• Alignment Length: 362
• Identity: 90/362 - (24%)
• Similarity: 134/362 - (37%)
• Gaps: 79/362 - (21%)

  Fly   199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
            |.:..|||||.|..:|:.|.|...|..||.|..:.::        |.|.|:..|.    |.....
Zfish     3 DSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVL--------RQFAFVHLQG----EGAADS 55

  Fly   264 PIHTLDGKKIDPKH-ATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQ 327
            .|..|:|::...:. ...:::.|..|.| |:|||.:....|.|::...||.:|.|.:...:..:.
Zfish    56 AIRDLNGREYRGRSLVVEESKGRPLNST-KVFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKP 119

  Fly   328 TKRHRGFGFVTFENEDVVDRVCE-IHFHTIKNK--KVECKKAQPKEAVTPAAQLLQKRIMLGTLG 389
            :.. .|:.||..|:::..::..| :|..|...:  .||..|.|......|.|.
Zfish   120 SSL-TGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVELSKVQQSTNKVPCAS------------ 171

  Fly   390 VQLPTAPGQLIGARG--AGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQNPFQVQNA---- 448
                      .||.|  ||...:|...|..:.:|.....||||||  |.|    |.|||.:
Zfish   172 ----------CGAHGHFAGECPINRPPMEHHQSQAAVLAAAAAAA--AGL----PLQVQQSVHNS 220

  Fly   449 -----------AAAASIANQAGFGKLLTTYPQTALHSVRY---APYSIPASAATANAALMQAHQA 499
                       ||...:......||.:::....||.|..|   |...|.:::.||.....:|...
Zfish   221 FYNTASSDPTFAALKDLTTSRVDGKPVSSMVYGALASQVYSSVADQVIGSTSQTAEGYPTEAEAP 285

  Fly   500 QSV-------------AAAAHHHQQQQQQQHHHQQQT 523
            ..|             ||.|...:|.||.....|..|
Zfish   286 PGVAYGTEPDPHTLFEAARARFFEQGQQVLAEQQAVT 322

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	21/74 (28%)
		RRM2_MSI	292..365	CDD:240769	19/75 (25%)
rbm14a	NP_001108616.1	RRM_SF	7..75	CDD:473069	21/79 (27%)
		RRM_SF	84..156	CDD:473069	17/72 (24%)