DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Rbp1-like

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001188585.1 Gene:Rbp1-like / 32293 FlyBaseID:FBgn0030479 Length:247 Species:Drosophila melanogaster


Alignment Length:97 Identity:24/97 - (24%)
Similarity:40/97 - (41%) Gaps:20/97 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 RPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFEN----ED 343
            |.|:.:...|::||.:....|..|::..||::||:....:     .:...||.||.||:    ||
  Fly     3 RYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWV-----ARNPPGFAFVEFEDRRDAED 62

  Fly   344 VV-----DRVCEIHFHTIKNKKVECKKAQPKE 370
            ..     .|.|....      :||....:.:|
  Fly    63 ATRGLDGTRCCGTRI------RVEMSSGRSRE 88

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069
RRM2_MSI 292..365 CDD:240769 21/81 (26%)
Rbp1-likeNP_001188585.1 RRM_SRSF3_like 12..81 CDD:409808 20/79 (25%)
Blue background indicates that the domain is not in the aligned region.

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