Protein Alignment msi and hnrnpa0l

DIOPT Version :10

• Sequence 1: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001268650.1
• Gene: hnrnpa0l / 321899
• ZFINID: ZDB-GENE-030131-618
• Length: 302
• Species: Danio rerio
• Alignment Length: 171
• Identity: 71/171 - (41%)
• Similarity: 104/171 - (60%)
• Gaps: 5/171 - (2%)

  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTD-VLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHT 267
            |||||||:.||:.:.|:.:|..:|.:|| |::|..|: ||||.|||:|:......:..:....|.
Zfish     7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPL-QRSRCFGFVTYSSTEEADAAMSARPHI 70

  Fly   268 LDGKKIDPKHATPK---NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTK 329
            :||..:|.|.|..:   .:|....|.|||||||:..|...|.::.|||||||:|:..::.|:.|.
Zfish    71 VDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTG 135

  Fly   330 RHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
            :.||||||.|::.|..|:...:.||:|...|||.|||..|:
Zfish   136 KKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALTKQ 176

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	30/74 (41%)
		RRM2_MSI	292..365	CDD:240769	33/72 (46%)
hnrnpa0l	NP_001268650.1	RRM1_hnRNPA0	4..82	CDD:409764	30/75 (40%)
		RRM_SF	98..177	CDD:473069	37/79 (47%)