DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and hnrnpa0l

DIOPT Version :9

Sequence 1:NP_001247303.1 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001268650.1 Gene:hnrnpa0l / 321899 ZFINID:ZDB-GENE-030131-618 Length:302 Species:Danio rerio


Alignment Length:171 Identity:71/171 - (41%)
Similarity:104/171 - (60%) Gaps:5/171 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTD-VLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHT 267
            |||||||:.||:.:.|:.:|..:|.:|| |::|..|: ||||.|||:|:......:..:....|.
Zfish     7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPL-QRSRCFGFVTYSSTEEADAAMSARPHI 70

  Fly   268 LDGKKIDPKHATPK---NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTK 329
            :||..:|.|.|..:   .:|....|.|||||||:..|...|.::.|||||||:|:..::.|:.|.
Zfish    71 VDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTG 135

  Fly   330 RHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
            :.||||||.|::.|..|:...:.||:|...|||.|||..|:
Zfish   136 KKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALTKQ 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_001247303.1 RRM1_hnRNPA_hnRNPD_like 205..276 CDD:240771 28/71 (39%)
RRM2_MSI 292..365 CDD:240769 33/72 (46%)
hnrnpa0lNP_001268650.1 RRM1_hnRNPA0 4..82 CDD:240772 30/75 (40%)
RRM_SF 98..177 CDD:302621 37/79 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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