Protein Alignment msi and HNRNPAB

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_112556.2
• Gene: HNRNPAB / 3182
• HGNCID: 5034
• Length: 332
• Species: Homo sapiens
• Alignment Length: 253
• Identity: 97/253 - (38%)
• Similarity: 132/253 - (52%)
• Gaps: 46/253 - (18%)

  Fly   140 GLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAP-- 202
            |.|||.:                 :.||.:|..:|...|.:.:|:   .|.:.:|..|:..||
Human     5 GEEQPME-----------------TTGATENGHEAVPEGESPAGA---GTGAAAGAGGATAAPPS 49

  Fly   203 --------------------GKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFG 247
                                ||:|||||||.||...||:||..||.|.|..|..||.|.||||||
Human    50 GNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 114

  Fly   248 FITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFS 312
            ||.|::..:|||||....|.|||:.||||.|....:    :..|||||||::.:.:.|:::.||.
Human   115 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKK----DPVKKIFVGGLNPEATEEKIREYFG 175

  Fly   313 QFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
            :||.:|...:.||.:..:.|||.|:||:.|:.|.:|.|..|||:...|.|.|.|||||
Human   176 EFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKE 233

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	41/70 (59%)
		RRM2_MSI	292..365	CDD:240769	29/72 (40%)
HNRNPAB	NP_112556.2	CBFNT	1..70	CDD:311868	15/84 (18%)
		RRM1_hnRNPAB	66..145	CDD:410151	45/78 (58%)
		RRM2_hnRNPAB	150..229	CDD:409997	31/82 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D496221at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
User_Submission	0	0.000	Not matched by this tool.
	3	2.920