DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Hnrnpdl

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:XP_063129121.1 Gene:Hnrnpdl / 305178 RGDID:1309950 Length:428 Species:Rattus norvegicus


Alignment Length:399 Identity:127/399 - (31%)
Similarity:182/399 - (45%) Gaps:77/399 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 NVPPPLQAAAAAAAAVPNLRFQTPIKAFACLTAATRSVSEMNATSLYAGNPMENAAAAAAAAAAG 81
            :|||||..:|.|                   |.|:||:|.....:.....|:..:.|::::....
  Rat     9 HVPPPLFPSAPA-------------------TLASRSLSHWRPRAPRQLAPLLPSLASSSSRQGA 54

  Fly    82 LIDPHHNRDLHQALVASIANNSVAAIGGGLTTAAVLKSAAQQSQQAVQQN------QNAVVVTPG 140
            .....|           :.....:.:.||    |.:|...::.....:::      |.:....||
  Rat    55 RRTQRH-----------VTAQQPSRLAGG----AAIKGGRRRRPDLFRRHFKSSSIQRSAAAAPG 104

  Fly   141 LEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGKL 205
            ....:|.|....:..:  |::|.     .:|.:....||..:.|..:..            .||:
  Rat   105 TRTARQHPLADGSATM--EDMNE-----YSNIEEFAEGSKINASKNQQD------------DGKM 150

  Fly   206 FVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDG 270
            |:|||||.||...|.||.:.||.|.|..|..||||.|||||||:.|::..:|:|||::..|.|||
  Rat   151 FIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDG 215

  Fly   271 KKIDPKHATP---KNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHR 332
            |.||||.|..   |..|      ||:||||:|.|||.|::|.||..||.:|...:.||.:|...|
  Rat   216 KLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERR 274

  Fly   333 GFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAPG 397
            ||.|:|:.:|:.|.::.|..:|.|.:.|.|.|.||||| |....|..||    |..|    .|.|
  Rat   275 GFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE-VYRQQQQQQK----GGRG----AAAG 330

  Fly   398 QLIGARGAG 406
            ...||||.|
  Rat   331 GRGGARGRG 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 42/73 (58%)
RRM2_MSI 292..365 CDD:240769 31/72 (43%)
HnrnpdlXP_063129121.1 None

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