Protein Alignment msi and Rbm31y

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: XP_229073.1
• Gene: Rbm31y / 302780
• RGDID: 1562219
• Length: 565
• Species: Rattus norvegicus
• Alignment Length: 516
• Identity: 138/516 - (26%)
• Similarity: 212/516 - (41%)
• Gaps: 99/516 - (19%)

  Fly   204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTL 268
            |:|:||||.:.:...|.||.:.||.:.|.:|..||.|..||||||:.|::..||||||:|..|.:
  Rat    34 KMFIGGLSQELNKQVLLEYLSKFGEIIDFIIKIDPNTGLSRGFGFVLFKDSSTVEKVLRVKDHKV 98

  Fly   269 DGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRG 333
            |||||:.|.|  |....|. ..||:||||::...|.|:::|||..||.:|...:.:...|:..|.
  Rat    99 DGKKIEFKRA--KALESQF-PIKKVFVGGLNPRMSEEKIRAYFGTFGQIEAIELPLCSDTQERRA 160

  Fly   334 FGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIML-GTLGVQLPTA-- 395
            |||:.:.:|:.|.:|.|..:|.|.:.:.|.|.|.|||  .||.||.:.:... ......:|.|
  Rat   161 FGFIKYMDENPVRKVLETRYHFIGSSRCEVKMAFPKE--YPARQLSKSKTRAKDRARTAVPAAEL 223

  Fly   396 -----------------------------PGQLIGARGAGVATMN-------PLAMLQNPTQLLQ 424
                                         .|.......:.|...|       |.|...||..::.
  Rat   224 ENHWRGGGSQNFHIMDNSDTQEANQDAHRAGSYTSRANSDVTLSNARGFRDTPNAFQANPNVIVT 288

  Fly   425 SPAAAAAAQQAALISQNPFQVQNAAAAAS----IANQAGFGKL----------LTTYPQTALHSV 475
            :.:|..|::.|.....|...:.:.|..|:    :|||..||.:          |.||| .||...
  Rat   289 NSSAFRASRTALRPISNTVGLSHYALGANPNAFLANQYTFGAIPNALRTSQYTLGTYP-NALGVS 352

  Fly   476 RYA------PYSIPASAATANAALMQAHQ--------AQSVAAAAHHHQQQQQQQHHHQQQTHN- 525
            :||      .:.|......||..:...:|        |..:...|.:........:.:...|::
  Rat   353 QYALAAYPNAFGINQCTLGANPNVFWTNQYPLGTYPDAFGIGQYAWNMSPNVFGANQYTLGTNSD 417

  Fly   526 -------AHVAAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAANGAGAAGAHSLAAAAQQA-- 581
                   :.||.....:.:|:...:||..   |..:...|.|| .|..|:  :|....|:|..
  Rat   418 AFRPNCYSFVANPYDIRTNHYVLATNPNV---SRTSQYILGAN-PNAFGS--SHYSVGASQNVFG 476

  Fly   582 ------GLMAGNPLNAAAAAAAAAA-NPAAAYSNYALANVDMSSFQGV--DWSTMYGMGMY 633
                  | :.||...||.::..... |.:..|.|:......:.:|.|.  |:..:|..|.|
  Rat   477 PNQHSFG-VNGNFCGAAGSSGGTGGFNFSQVYGNFLNVCNTLPAFHGSNGDYFFLYSYGAY 536

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	35/70 (50%)
		RRM2_MSI	292..365	CDD:240769	25/72 (35%)
Rbm31y	XP_229073.1	RRM	12..291	CDD:223796	84/261 (32%)
		RRM_SF	35..108	CDD:302621	36/72 (50%)
		RRM_SF	119..193	CDD:302621	26/73 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D496221at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.920