DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Ncl

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_035010.3 Gene:Ncl / 17975 MGIID:97286 Length:707 Species:Mus musculus


Alignment Length:424 Identity:91/424 - (21%)
Similarity:156/424 - (36%) Gaps:108/424 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ENPAVAAKLPFPYNVPPPLQAAAAAAAAVPNLRFQTPIKAFACLTAATRSVSEMN--ATSLYAGN 66
            |.|..||.......:....:|..|....|......||...|.......:||:|:.  .:.|:|.|
Mouse   272 EEPVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKN 336

  Fly    67 PMENA-AAAAAAAAAGLIDPHHNRDLHQALVASIANNSVAAIGGGLTTAAVLKSAAQQSQQAVQQ 130
            .:... .........|.:|.....||.:||              .||...|..:..:        
Mouse   337 DLAVVDVRTGTNRKFGYVDFESAEDLEKAL--------------ELTGLKVFGNEIK-------- 379

  Fly   131 NQNAVVVTPGLEQPKQEPAQ--QAALALLKENVNAS-------------------AGAGQNNG-- 172
                      ||:||...::  :||..||.:|::.:                   :..|::.|  
Mouse   380 ----------LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIA 434

  Fly   173 --------QAAMGGSNKSGS--SGRS---------------TPSLSGGSGSDPAPGKLFVGGLSW 212
                    .|......|.|:  .|||               |...|..||....   |.:..||:
Mouse   435 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKT---LVLSNLSY 496

  Fly   213 QTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVL----KVPIHTLDGK-- 271
            ..:.:.|:|   :|...|.:.:.::| ..:.:|:.||.|......::.|    |:.|   :|:  
Mouse   497 SATKETLEE---VFEKATFIKVPQNP-HGKPKGYAFIEFASFEDAKEALNSCNKMEI---EGRTI 554

  Fly   272 KIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGF 336
            :::.:.:..:::|     :|.:||.|:|:||:.|.:|..|.  |.|...: :.|::|...:||||
Mouse   555 RLELQGSNSRSQP-----SKTLFVKGLSEDTTEETLKESFE--GSVRARI-VTDRETGSSKGFGF 611

  Fly   337 VTFENEDVVDRVCE-IHFHTIKNKKVECKKAQPK 369
            |.|.:|:......| :....|...||....|:||
Mouse   612 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 16/79 (20%)
RRM2_MSI 292..365 CDD:240769 24/73 (33%)
NclNP_035010.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..308 7/35 (20%)
PRK13808 <12..142 CDD:172341
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 309..383 CDD:409837 18/105 (17%)
RRM2_NCL 392..467 CDD:409838 13/74 (18%)
RRM3_NCL 486..558 CDD:409839 16/81 (20%)
RRM4_NCL 569..646 CDD:409840 28/80 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..707 3/7 (43%)
Blue background indicates that the domain is not in the aligned region.

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