Protein Alignment msi and sqd-1

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 380
• Identity: 99/380 - (26%)
• Similarity: 151/380 - (39%)
• Gaps: 83/380 - (21%)

  Fly   158 KENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEY 222
            |.|.|||... :.||.:..|..:|                      |:||||:|.:.:::.|..:
 Worm     7 KINGNASETI-KENGHSTKGNEDK----------------------KIFVGGISPEVNNEDLSSH 48

  Fly   223 FNMFGTVTDVLIMKDPVTQRSRGFGFITFQ--EPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 285
            |..:|.|....:..|....|||||.|:.|.  |.|.:  .|.....|:.||.::.|       |.
 Worm    49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKL--ALAAREQTIKGKSVEVK-------PA 104

  Fly   286 QANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE 350
            ::.:.||:||||:..|.|.::::::|.|||.|::.....|:|||..|.|.|:.||.|:..|:...
 Worm   105 KSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASS 169

  Fly   351 IHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAPGQLIGARG--AGVATMNPL 413
            ....|...::.:.|||.|:                   |.:.|.|.|::.|.||  .|....|..
 Worm   170 QTKQTFGTRECDVKKAVPQ-------------------GKRFPGAQGRMPGGRGMYGGRGGNNNS 215

  Fly   414 AMLQNPTQLLQSPAAAAAAQQAALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYA 478
            .......|:...|..|..|..........:..|.||...:..:..|:|....::
 Worm   216 GWYAGWGQIGAMPYGATGAAWGDWYGNGYYGQQGAAHHNNSGSSQGYGSGYQSF----------- 269

  Fly   479 PYSIPASAATANAALMQAHQAQSVAAAAHHHQQQQQQQHHHQQQTHNAHVAAAQQ 533
                     ..|.:.....|||. |...::.|.:.|||  .||||     |.|||
 Worm   270 ---------AGNNSGFDYQQAQG-ARQGNNGQPRFQQQ--PQQQT-----AQAQQ 307

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	23/72 (32%)
		RRM2_MSI	292..365	CDD:240769	24/72 (33%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	25/82 (30%)
		RRM_SF	111..185	CDD:418427	25/73 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D496221at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920