DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msi and Msi1

DIOPT Version :9

Sequence 1:NP_001247303.1 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_032655.1 Gene:Msi1 / 17690 MGIID:107376 Length:362 Species:Mus musculus


Alignment Length:317 Identity:137/317 - (43%)
Similarity:175/317 - (55%) Gaps:49/317 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 PSL-SGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQE 253
            |.| |..|..||.  |:|:|||||||:.:.|:|||..||.|.:.|:|:||:|:|||||||:||.:
Mouse     8 PGLASPDSPHDPC--KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70

  Fly   254 PCTVEKVLKVPIHTLDGKKIDPKHATPKN-RPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPV 317
            ...|:|||....|.||.|.||||.|.|:. :|:...:||||||||:|.:|:.|:||.||.|||.|
Mouse    71 QAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135

  Fly   318 EETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLL-QK 381
            ::.:::.|:.|.|||||||||||:||:|::|||||||.|.||.||||||||||.::|..... :.
Mouse   136 DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS 200

  Fly   382 RI-------------MLGTLGVQLPT---------APG-------------QLIGARGAGVATMN 411
            |:             |||..|.|..|         |||             .|..|......|..
Mouse   201 RVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERSPLPSAPVLPELTAI 265

  Fly   412 PLAMLQNPTQLLQSPAAAAAAQQAALISQNPFQVQNAAAAASIANQAGFGKLLTTYP 468
            ||.        ...|.|||||..|.:..........|....|..::.| |.|.||.|
Mouse   266 PLT--------AYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTG-GFLGTTSP 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_001247303.1 RRM1_hnRNPA_hnRNPD_like 205..276 CDD:240771 39/70 (56%)
RRM2_MSI 292..365 CDD:240769 46/72 (64%)
Msi1NP_032655.1 RRM1_MSI 22..96 CDD:241020 41/73 (56%)
PABP-1234 <32..312 CDD:130689 120/288 (42%)
RRM2_MSI 110..183 CDD:240769 46/72 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000417
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101082
Panther 1 1.100 - - O PTHR48032
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X310
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.810

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