DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and cpf-2

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_499734.1 Gene:cpf-2 / 176742 WormBaseID:WBGene00000774 Length:336 Species:Caenorhabditis elegans


Alignment Length:397 Identity:86/397 - (21%)
Similarity:139/397 - (35%) Gaps:129/397 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 SGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTV 257
            |.|.|:|.:...:|||.:|:..|.|.::..|:..|.|..:.::.|..|.:.:|:|||.|.:..|.
 Worm     8 SSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTA 72

  Fly   258 EKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVM 322
            |    |.|..|:|.::       ..|..:.:..    .||::.    ||..:..:...||||   
 Worm    73 E----VAIRNLNGYEL-------SGRILRVDSA----AGGMNM----EEFGSSSNAPAPVEE--- 115

  Fly   323 LMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGT 387
                     ..:|                         .||...:..|.::.....|        
 Worm   116 ---------NPYG-------------------------PECDAGKAPERISQTVASL-------- 138

  Fly   388 LGVQLPTAPGQLIGARGAGVATMNPL--AMLQNPTQ----LLQSPAAAAAAQQAALISQNPFQVQ 446
                   ||.::.       ..|..|  ::..||::    |::.|..|.|..|||::    .::.
 Worm   139 -------APEKMF-------ELMKQLQESLKNNPSELHKFLVEHPQIAYAVLQAAVV----MRIV 185

  Fly   447 NAAAAASI--ANQAGFGKLLTTY---PQTALHSVRYAPYSIPASAATANAALM------------ 494
            :...|..:  .|:|.   .||.:   ||.|...|:.....:|.....|:....            
 Worm   186 DPQTALGLLHRNKAA---TLTPFHNTPQGAPPMVQQQQMPMPPKPTFAHPGPSMGPPMGPPMGPP 247

  Fly   495 ----QAHQ-----AQSVAAAAHH--HQQQ---------QQQQHHHQQQTHNAHVAAAQQQQQSHH 539
                ||.|     .|.||...:.  .|||         ||.|.:||::..||.: ..|..|.|.|
 Worm   248 MGHPQAPQYGQNYGQPVAPQQYKPPPQQQPPVQMRPPVQQPQQNHQEEQQNAEL-LMQVMQLSEH 311

  Fly   540 NAVSNPA 546
            :....||
 Worm   312 DLQMLPA 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 22/73 (30%)
RRM2_MSI 292..365 CDD:240769 11/72 (15%)
cpf-2NP_499734.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 23/86 (27%)
CSTF2_hinge 115..194 CDD:433869 20/141 (14%)
CSTF_C 299..334 CDD:464130 7/21 (33%)

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