DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and DAZ1

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_004072.3 Gene:DAZ1 / 1617 HGNCID:2682 Length:744 Species:Homo sapiens


Alignment Length:514 Identity:106/514 - (20%)
Similarity:168/514 - (32%) Gaps:182/514 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 QAVQQNQNAVV-----VTPGLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSGSS 185
            |.|.:|.|...     :||   .|..:..|.||        |........:.:|:...|:.:.|.
Human   140 QNVWRNPNTETYLQPQITP---NPVTQHVQSAA--------NPETPNSTISREASTQSSSAAASQ 193

  Fly   186 GRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQR---SRGFG 247
            |...|.      ....|..:||||:..:....::...|..:|:|.:|.|    :|.|   |:|:|
Human   194 GWVLPE------GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKI----ITNRTGVSKGYG 248

  Fly   248 FITFQEPCTVEKVLKVPIHTLDGKKID-----------PKHATPK-------------------- 281
            |::|.....|:|::...|| ..|||:.           .:|..|:                    
Human   249 FVSFVNDVDVQKIVGSQIH-FHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPN 312

  Fly   282 ---------------------NRPRQANKT---------------------------KKIFVGGV 298
                                 ..|...|.|                           ..:||||:
Human   313 TETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGI 377

  Fly   299 SQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRV--CEIHFH------- 354
            .......|:.:.|.::|.|:| |.::..:|...:|:|||:|.|:..|.::  .:||||       
Human   378 DARMDETEIGSCFGRYGSVKE-VKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIHFHGKKLKLG 441

  Fly   355 -TIKNKKVECKKAQPKEAVT---PAAQL------------LQKRIMLG--TLGVQ----LPTAPG 397
             .|:.:|:..:..||:..|.   |..|.            ||.:|...  |..||    .|.:||
Human   442 PAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQAYSAYPHSPG 506

  Fly   398 QLIGARGAGVATMN--------------------PLAMLQNPTQLLQSPAAAAAAQQAALIS--- 439
            |:|  .|..:...|                    |:...|......:||....|..|..:.:   
Human   507 QVI--TGCQLLVYNYQEYPTYPDSAFQVTTGYQLPVYNYQPFPAYPRSPFQVTAGYQLPVYNYQA 569

  Fly   440 -----QNPFQV-----------QNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYSI 482
                 .:||||           |...|..|...|...|..|..|...|..:...:|:.:
Human   570 FPAYPNSPFQVATGYQFPVYNYQPFPAYPSSPFQVTAGYQLPVYNYQAFPAYPNSPFQV 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069 23/87 (26%)
RRM2_MSI 292..365 CDD:240769 24/82 (29%)
DAZ1NP_004072.3 RRM_DAZL 35..116 CDD:410073
PABP-1234 42..603 CDD:130689 100/487 (21%)
RRM_DAZL 200..281 CDD:410073 24/85 (28%)
RRM_DAZL 365..446 CDD:410073 23/81 (28%)
Daz 596..616 CDD:465893 6/19 (32%)
Daz 620..640 CDD:465893 1/9 (11%)
Daz 644..664 CDD:465893
Daz 668..688 CDD:465893
Daz 692..712 CDD:465893
Blue background indicates that the domain is not in the aligned region.

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