DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and Hnrnpab

DIOPT Version :9

Sequence 1:NP_001247303.1 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001041526.1 Gene:Hnrnpab / 15384 MGIID:1330294 Length:332 Species:Mus musculus


Alignment Length:252 Identity:104/252 - (41%)
Similarity:139/252 - (55%) Gaps:17/252 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 SAAQQSQQAVQQNQNAVVVTPGLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSG 183
            :|.:|..:.....:|.....|..|.|.:..|..||.|       ||||:|.....|..|  |::|
Mouse     4 AAEEQPMETTGATENGHEAAPEGEAPVEPSAAAAAPA-------ASAGSGGGTTTAPSG--NQNG 59

  Fly   184 SSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGF 248
            :.|...    ..|.::...||:|||||||.||...||:||..||.|.|..|..||.|.|||||||
Mouse    60 AEGDQI----NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 120

  Fly   249 ITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQ 313
            |.|::..:|||||....|.|||:.||||.|....:    :..|||||||::.:.:.|:::.||.|
Mouse   121 ILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKK----DPVKKIFVGGLNPEATEEKIREYFGQ 181

  Fly   314 FGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 370
            ||.:|...:.:|.:..:.|||.|:||:.||.|.:|.|..|||:...|.|.|.|||||
Mouse   182 FGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKE 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_001247303.1 RRM1_hnRNPA_hnRNPD_like 205..276 CDD:240771 41/70 (59%)
RRM2_MSI 292..365 CDD:240769 30/72 (42%)
HnrnpabNP_001041526.1 CBFNT 1..75 CDD:285369 21/83 (25%)
RRM1_hnRNPAB 76..150 CDD:241201 44/73 (60%)
RRM2_hnRNPAB 155..234 CDD:241028 32/82 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D496221at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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