DRSC/TRiP Functional Genomics Resources

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Protein Alignment msi and CSTF2

DIOPT Version :10

Sequence 1:NP_733108.2 Gene:msi / 43087 FlyBaseID:FBgn0011666 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:377 Identity:83/377 - (22%)
Similarity:131/377 - (34%) Gaps:96/377 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 PRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVV--- 345
            |......:.:|||.:..:.:.|::|..||:.|||....::.|::|.:.:|:||..:::::..   
Human     9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73

  Fly   346 ----------DRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAPGQLI 400
                      .|...:.....:..|.|.|.                   |||....:.:..|:.|
Human    74 MRNLNGREFSGRALRVDNAASEKNKEELKS-------------------LGTGAPVIESPYGETI 119

  Fly   401 GARGA------GVATMNPLAM----------LQNPTQ-----LLQSPAAAAAAQQAALISQNPFQ 444
            ....|      .||::.|..|          :||..|     |||:|..|.|..||.::.:   .
Human   120 SPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR---I 181

  Fly   445 VQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYSIPASAATANAALMQAHQAQSVAAAAHHH 509
            |....|...:..|.....|:...|| .:|..  .|.|  .|..:.|....||.||||:.      
Human   182 VDPEIALKILHRQTNIPTLIAGNPQ-PVHGA--GPGS--GSNVSMNQQNPQAPQAQSLG------ 235

  Fly   510 QQQQQQQHHHQQQTHNAHV-AAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAANG-----AGA 568
                           ..|| .|....|.|....|..| .|..:|.......:.|..|     .|.
Human   236 ---------------GMHVNGAPPLMQASMQGGVPAP-GQMPAAVTGPGPGSLAPGGGMQAQVGM 284

  Fly   569 AGAHSLAAAAQQAGLMAGNPLNAAAAAA-----AAAANPAAAYSNYAL-ANV 614
            .|:..::....| |.:..:|:..|..|:     ....:|.||....:| |||
Human   285 PGSGPVSMERGQ-GTLQHSPVGPAGPASIERVQVPMQDPRAAMQRGSLPANV 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msiNP_733108.2 RRM_SF 204..278 CDD:473069
RRM2_MSI 292..365 CDD:240769 18/85 (21%)
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 83/377 (22%)
RRM_CSTF2_CSTF2T 10..94 CDD:410072 16/83 (19%)
CSTF2_hinge 112..191 CDD:433869 20/81 (25%)
PHA03378 <253..455 CDD:223065 20/85 (24%)
CSTF_C 553..593 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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