Protein Alignment msi and msi2

DIOPT Version :9

• Sequence 1: NP_001247303.1
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Sequence 2: XP_004911774.1
• Gene: msi2 / 100038158
• XenbaseID: XB-GENE-488852
• Length: 407
• Species: Xenopus tropicalis
• Alignment Length: 441
• Identity: 169/441 - (38%)
• Similarity: 230/441 - (52%)
• Gaps: 70/441 - (15%)

  Fly   193 SGGSGSDPA--PGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPC 255
            :.||.:|..  |||:|:||||||||.|.|::|||.||.:.:.::|:||.|:|||||||:||.:|.
 Frog     9 TSGSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFNKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73

  Fly   256 TVEKVLKVPIHTLDGKKIDPKHATPKN-RPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEE 319
            :|:|||..|.|.||.|.||||.|.|:. :|:...:||||||||:|.:|..|:||.||.|||.||:
 Frog    74 SVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVED 138

  Fly   320 TVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKR-- 382
            .:::.|:.|.|||||||||||.||||::|||||||.|.||.||||||||||.:.|.....:.|
 Frog   139 AMLMFDKTTNRHRGFGFVTFEIEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGL 203

  Fly   383 ------IMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQN 441
                  .|||...:..|    ..:...|.|.....|....|.|    ..|||||....||.
 Frog   204 PYTMDAFMLGMGMLGYP----NFVATYGRGYPGFAPSYSYQFP----GFPAAAAYGPVAAA---- 256

  Fly   442 PFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYAPYSIPASAATANAALMQAHQAQSVAAAA 506
                  |.|||..:....:|...|...|.|  ::.:|.|   .|.....|.::::..|.|.:.:.
 Frog   257 ------AVAAARGSGIPDYGFYTTPGDQRA--TLSFADY---GSMGPRTAQMLRSEHAASASNSP 310

  Fly   507 HHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAANGAGAAGA 571
            .||.....|  .......|::.|      |.::.|.::||            .||.|...|..||
 Frog   311 LHHLPSPDQ--FKSPAVLNSYSA------QPNYGAPASPA------------GANPARPGGFPGA 355

  Fly   572 HS-------LAAAAQQAGLMAGNPLNAAAAAAAAA-----ANP--AAAYSN 608
            :|       ...|:|.:|:  ||.::||:....:.     |.|  |.|::|
 Frog   356 NSPGPVADLYGTASQDSGV--GNYISAASPQPGSGFSHGIAGPLIATAFTN 404

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
msi	NP_001247303.1	RRM1_hnRNPA_hnRNPD_like	205..276	CDD:240771	41/70 (59%)
		RRM2_MSI	292..365	CDD:240769	48/72 (67%)
msi2	XP_004911774.1	RRM	<2..162	CDD:223796	85/152 (56%)
		RRM1_MSI	23..97	CDD:241020	43/73 (59%)
		RRM2_MSI	111..184	CDD:240769	48/72 (67%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000417
OrthoInspector	1	1.000	-	-		otm48807
Panther	1	1.100	-	-	O	PTHR48032
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X310
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	5	5.010