DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment XNP and Smarca5

DIOPT Version :10

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:NP_444354.2 Gene:Smarca5 / 93762 MGIID:1935129 Length:1051 Species:Mus musculus


Alignment Length:965 Identity:220/965 - (22%)
Similarity:361/965 - (37%) Gaps:282/965 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 SSRAESPPRPKRCVVRLKRVSLPKTKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEADSDYEA 297
            ||..|.||.|               .|...|.|.|:.....:::..|.......:.:...:....
Mouse     2 SSAVEPPPPP---------------PPESAPSKPSAAGAGGSSSGNKGGPEGGAAPAAPCAAGSG 51

  Fly   298 PA-AEEEEEEERKSSGDEEEAANSSDSEVMPQRKRRRKKSESDKGSSDFEPEEKQ---------- 351
            || .|.||..:..|.|.::        |:........:|.::|: ::.||...||          
Mouse    52 PADTEMEEVFDHGSPGKQK--------EIQEPDPTYEEKMQTDR-ANRFEYLLKQTELFAHFIQP 107

  Fly   352 -----------KKKGRKRIKKTSSGESDGDGDDDKQKNKRKHIRKIIKTKDLDLTTKEAAKEEDD 405
                       .|.||.|:||           |:||        .::...  |...:...:|||:
Mouse   108 AAQKTPTSPLKMKPGRPRVKK-----------DEKQ--------NLLSVG--DYRHRRTEQEEDE 151

  Fly   406 RRKRIEDRQKLYNRIFVKSESVEINELVLDFDEESKKALLQVDKGLLKKLKPHQVAGVKFMWDAC 470
            .               :.:||.:...:...|::...    .|..|   ||:.:||.|:.::    
Mouse   152 E---------------LLTESSKATNVCTRFEDSPS----YVKWG---KLRDYQVRGLNWL---- 190

  Fly   471 FETLKESQEKPGSGCILAHCMGLGKTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFT 535
             .:|.|:    |...|||..||||||||.::|...:.......|...||:  |.||::||..||.
Mouse   191 -ISLYEN----GINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV--PKSTLHNWMSEFK 248

  Fly   536 SWMKFANRNDIEVYDISRYKDKPTR------IFKLNEWFNEGGVCILGYDMYRILANEKAKGLRK 594
            .|:.       .:..:....||..|      :....||    .||:..|:|   |..||:...:.
Mouse   249 KWVP-------TLRSVCLIGDKEQRAAFVRDVLLPGEW----DVCVTSYEM---LIKEKSVFKKF 299

  Fly   595 KQREQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQ 659
            ..|             .:|.||.|.:||||:.:|:.|...:|..|::||||||||||.|.:.::.
Mouse   300 NWR-------------YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLN 351

  Fly   660 FVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLP 724
            |:.|::..:..::.:.|        .|::...|.:|::.    ||.:|...:.||..:.:...||
Mouse   352 FLLPDVFNSADDFDSWF--------DTNNCLGDQKLVER----LHMVLRPFLLRRIKADVEKSLP 404

  Fly   725 PKHEYVVYTTLSELQQKLYGYYMTTHREQSGGDVVGKGA-----RLFQDFQDLRRIWTHPMNLRV 784
            ||.|..:|..||::|::.|     |.......|::....     ||......||:...||...  
Mouse   405 PKKEVKIYVGLSKMQREWY-----TRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLF-- 462

  Fly   785 NSDNVIAKRLLSNDDSDMEGFICDETDEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRKTRN 849
                                                                             
Mouse   463 ----------------------------------------------------------------- 462

  Fly   850 GNAGGGDSDSDLEMLGGLGGGSSVQKDDPSEWWKPFVEERELNNVHHSPKLLILLRLLQQCEAIG 914
                                       |.:|...|:..:..|  |.:|.|:::|.:||.:.:..|
Mouse   463 ---------------------------DGAEPGPPYTTDMHL--VTNSGKMVVLDKLLPKLKEQG 498

  Fly   915 DKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMC 979
            .::|:|||..:.||::|.:..     .:|||                 |.||||....::|:...
Mouse   499 SRVLIFSQMTRVLDILEDYCM-----WRNYE-----------------YCRLDGQTPHDERQDSI 541

  Fly   980 KQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYR 1044
            ..:|. .|....:|::|||||||||||..|:.|:::|..|||..|.|::.|.:|.||.|...::|
Mouse   542 NAYNE-PNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFR 605

  Fly  1045 LIAMGTMEQKVYERQVAKQATAKRVIDE-QQISRHYNQTDLMELYSYELKPST----EREMPILP 1104
            .|...|:|:::.||...|......||.: :.:.::.|:....|:.......:|    .:|..|..
Mouse   606 FITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITD 670

  Fly  1105 KDRLFAEILTEHEKLIFKYHEHDSLLEQEEHENLTEEERKSAWAEYEAEKTRTVQ 1159
            :|  ...||....|...:.:|..|.:.:....|.|.:...|.: .:|.|..|..|
Mouse   671 ED--IDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVY-NFEGEDYREKQ 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 PTZ00121 <173..>460 CDD:173412 45/248 (18%)
HepA <382..1071 CDD:440319 167/699 (24%)
DEXHc_ATRX 455..699 CDD:350826 72/249 (29%)
Smarca5NP_444354.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..81 19/101 (19%)
PLN03142 68..1011 CDD:215601 202/884 (23%)
DEAH box 307..310 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1014..1051
Blue background indicates that the domain is not in the aligned region.

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