DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment XNP and RDH54

DIOPT Version :9

Sequence 1:NP_651398.1 Gene:XNP / 43080 FlyBaseID:FBgn0039338 Length:1311 Species:Drosophila melanogaster
Sequence 2:NP_009629.6 Gene:RDH54 / 852365 SGDID:S000000277 Length:958 Species:Saccharomyces cerevisiae


Alignment Length:1093 Identity:259/1093 - (23%)
Similarity:443/1093 - (40%) Gaps:317/1093 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 KRQKAQKEATTSSARAIRSVNGT-----------------RRGSLSSERSSRASSSRAESPPRPK 243
            :|:|..:|...||.......:||                 |.||....:....:::...:|....
Yeast    10 RREKILQEVKNSSVYQTVFDSGTTQMQIPKYENKPFKPPRRVGSNKYTQLKPTATAVTTAPISKA 74

  Fly   244 RCVVRLKR-VSL-PKTKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEADSDYEAPAAEEEEEE 306
            :..|.||| :|. |....|:||..:||:......|....:....|.::.:...|..         
Yeast    75 KVTVNLKRSISAGPTLNLAKKPNNLSSNENTRYFTIMYRKPTTKKHKTWSGDGYAT--------- 130

  Fly   307 ERKSSGDE----EEAANSSDSEVMPQRKRRRKKSESDK--------GSSDFEPEEKQKKKGRKRI 359
             .|:|.|:    .||.....|.::|        |:||.        ||::.:.:.:.|:....|.
Yeast   131 -LKASSDKLCFYNEAGKFLGSSMLP--------SDSDSLFETLFKAGSNEVQLDYELKENAEIRS 186

  Fly   360 KKTSSGESDGD----------------GDDDKQK---------NKRKHIRKIIKTKDLDLTTKEA 399
            .|.:..::.|:                .|..|.:         |..|..:.:.|..:..:||...
Yeast   187 AKEALSQNMGNPSPPTTSTTETVPSTKNDGGKYQMPLSQLFSLNTVKRFKSVTKQTNEHMTTVPK 251

  Fly   400 AKEEDDRRK--RIEDRQKLYNRIFV-KSESVEINELVLDFDEESKKALLQVDKGLLKKLKPHQVA 461
            ..:....:|  .:.|..|:.|.|.: |:.:.|::.:              ||..|.|.|:|||..
Yeast   252 TSQNSKAKKYYPVFDVNKIDNPIVMNKNAAAEVDVI--------------VDPLLGKFLRPHQRE 302

  Fly   462 GVKFMWDACFETLKESQEKPG----------------SGCILAHCMGLGKTLQVVTLSHTLL--- 507
            |||||:|......:.:.|.|.                |||:||..|||||||..:||..||:   
Yeast   303 GVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIRQT 367

  Fly   508 -----VNTRRTGV------DRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYKDKP--- 558
                 |:..::|:      .::|::.|::.:.||.|||..|:   |.:.|.|..:|. ::.|   
Yeast   368 PFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWL---NLSRIGVLTLSS-RNSPDMD 428

  Fly   559 ----TRIFKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHL 619
                ....|:...:.   |.|:||:....::.|..|.          :.|:    |::||||||.
Yeast   429 KMAVRNFLKVQRTYQ---VLIIGYEKLLSVSEELEKN----------KHLI----DMLVCDEGHR 476

  Fly   620 LKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQ 684
            |||..:.|...:..:..:|:::|||||:||:|.|::.:|.|:.|.:||::..:..||:.|||..:
Yeast   477 LKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRAR 541

  Fly   685 YTDS--TERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYM 747
            .|.:  .|..|...:.||..:.::.:..|.||..::|..|||||.:.:::.       |.|...:
Yeast   542 DTANRYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFC-------KPYSQQI 599

  Fly   748 TTHREQSGGDVVGKGARLFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDSDMEGFICDETDE 812
            ...::      :.:||||  ||..|                                        
Yeast   600 LAFKD------ILQGARL--DFGQL---------------------------------------- 616

  Fly   813 DEAASNSSDSCETFKSDASMSGLAASSGKVKKRKTRNGNAGGGDSDSDLEMLGGLGGGSSVQKDD 877
                        ||.|...:..|      :||.....|..|                      .|
Yeast   617 ------------TFSSSLGLITL------LKKVCNSPGLVG----------------------SD 641

  Fly   878 PSEWWKPFVEE--------RELNNVHHSPKLLILLRLLQQC-EAIGDKLLVFSQSLQSLDVIEHF 933
            |  ::|..:::        |.||    |.||.:|:.||:.. :...:|::|.|...|:||:||:.
Yeast   642 P--YYKSHIKDTQSQDSYSRSLN----SGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENL 700

  Fly   934 LSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTR 998
            :::                      :|..:.|||||...:||:::...||.  |.....||:|.:
Yeast   701 MNM----------------------AGMSHCRLDGSIPAKQRDSIVTSFNR--NPAIFGFLLSAK 741

  Fly   999 AGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQ 1063
            :||:|:|||.|:|:::||..||||.|.|::.|::|.||.|||:||||:..|.:::|:.:||:.|.
Yeast   742 SGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKN 806

  Fly  1064 ATAKRVIDEQQISRH-------YNQTDLMELYSYELKPSTEREMPILPKDRLFAEILTEHEKLIF 1121
            :.:::.:.:.::...       :|:.||.:|:|......:.....|...|.|..||         
Yeast   807 SLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSVHTDTKSNTHDLICSCDGLGEEI--------- 862

  Fly  1122 KYHEHDSLLEQEEHENLTEEERKS--AWAE--------YEAEKTRTVQASQYM 1164
               |:.   |..:.:|..|..::|  .|..        .||......:.|||:
Yeast   863 ---EYP---ETNQQQNTVELRKRSTTTWTSALDLQKKMNEAATNDDAKKSQYI 909

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XNPNP_651398.1 DTHCT 258..335 CDD:285332 15/80 (19%)
SNF2_N 458..779 CDD:278600 103/359 (29%)
DEXDc 483..646 CDD:238005 54/183 (30%)
Helicase_C 913..1035 CDD:278689 40/121 (33%)
RDH54NP_009629.6 DUF2439 108..>158 CDD:402138 11/67 (16%)
DEXHc_RAD54 296..573 CDD:350762 88/297 (30%)
SF2_C_SNF 663..789 CDD:350180 54/149 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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